New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2411407	36 (0.850)	3 (0.080)	3/250	NT	8.0%	intergenic (‑55/+32)	yfbS/hxpA	putative transporter YfbS/hexitol phosphatase A
	?	NC_000913	= 2411413	35 (0.880)					intergenic (‑61/+26)	yfbS/hxpA	putative transporter YfbS/hexitol phosphatase A

CATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTAACCGCAAT  >  NC_000913/2411271‑2411555                                                                                                                                               |                                                                                                                                               cATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCTCAACTTATCCTTGTTAATTGAGGGGGATGACTGGTGTCTGCCATAAAAAAGCCCCGACgcga                                                                                                                                                >  1:415324/1‑143 (MQ=255)      aTACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGAcgggg                                                                                                                                           >  2:766587‑M2/1‑138 (MQ=255)        acgcacgcTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGAcggggct                                                                                                                                         >  2:660565‑M2/1‑136 (MQ=255)            aCTGTGCCGGGCGCGAACAATACGATGGCAGCGGCCAGTAATGAAAGAACCCAAATCGGTGCACCGTTCACAACTTCTCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGTGCTAAAt                                                                                                                                     <  2:567177/143‑1 (MQ=255)             gtcggCCCGGCGCAAACAGGGCGATGGCAACGGCCAGGAATGAAAGAACCCAAATCGATTCACCGTTCACAACTTATCCGTGTTAATTGAGGGGGAGGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCCAAATc                                                                                                                                    <  2:374030/139‑1 (MQ=255)             ctctGCCCGGCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATc                                                                                                                                    <  2:58865/143‑1 (MQ=255)                       cGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGGTTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGgt                                                                                                                          <  2:2663/143‑1 (MQ=255)                               aGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACt                                                                                                                  >  1:739386/1‑143 (MQ=255)                                     gggaaaCGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAACAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGaataa                                                                                                            <  1:257612/139‑1 (MQ=255)                                         aaCGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAAc                                                                                                        >  2:564285/1‑143 (MQ=255)                                            taccAGTAATGAAAAGAGCCAACTCGATTGACCTTTCACAACGTATCGTTGTTAATTGAGTGCTATGACTTGATTCTGCCATAAAAAATCCGCGACTAGACGGGGCTAAATCATGATCATGTGTTTCACTGAATAATAACATc                                                                                                     <  2:639903/141‑1 (MQ=255)                                                     tcaaaGACCCCACATCAATTCACCGTTCACAACTTATCCTTGTCAATCGAGGGGGATGACGTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTgg                                                                                            <  1:44249/141‑1 (MQ=255)                                                       ggaGAACCCATACCAGTGCACCGTTTACTACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATACAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCt                                                                                          <  2:197784/141‑1 (MQ=255)                                                        aaGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCCCCActtacctg                                                                                         >  2:821160/1‑138 (MQ=255)                                                              ccAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAATAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATCACATCACCACTTAGCTGTTCGGt                                                                                   >  2:256383/1‑143 (MQ=255)                                                                aaaTCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGAGAATGGCGGTATTCTGCCATAAAAAAGCAACGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACGCACTAATAACGTCGCCATTTGCATCGTTGGTca                                                                                 >  2:176153/1‑143 (MQ=255)                                                                  aTCAAGTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAATAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTcaca                                                                               <  1:413987/143‑1 (MQ=255)                                                                   tCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCGCGACGGGACGGGGCTAAATCATGGTATGGCGCGAAACCAAACAATCACGTACCAATTTGGCGGTTTGGTCACAg                                                                              >  1:183678/1‑143 (MQ=255)                                                                   tCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAg                                                                              <  1:74516/143‑1 (MQ=255)                                                                         cACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATCCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAAttt                                                                        <  1:775487/143‑1 (MQ=255)                                                                             gTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTc                                                                    <  1:140684/143‑1 (MQ=255)                                                                               gcacaACCTATCCTTGTTAATTGAGTGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCa                                                                  <  2:239591/142‑1 (MQ=255)                                                                                 acaTCTGATCCGTGTTAGTTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGa                                                                <  2:824965/143‑1 (MQ=255)                                                                                 acaACTTATCCTTGTTAATTGAGGGGGCTGACTTGATTCTGCAATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGa                                                                >  1:176063/1‑143 (MQ=255)                                                                                  caACTTATCCTTGTTAATTGAGGCGGATGACTTGATTCTGCCATAAAAACGCCCCGACGAGACGGGGCTAAATCACGATCAGCTGTTTCACTGAATAATAACCTCGCCATTTCGCTGCTTGGTCACAGCACTTTGCTCCAgca                                                               >  2:117905/1‑141 (MQ=255)                                                                                            ttGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGAc                                                     >  1:588171/1‑143 (MQ=255)                                                                                                  aTTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATc                                               >  1:725384/1‑143 (MQ=255)                                                                                                    tGAGGGGGATGACTGGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGa                                             <  2:684412/143‑1 (MQ=255)                                                                                                         tggATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCCCa                                        <  2:631200/142‑1 (MQ=255)                                                                                                              ttcTTGATTCCGCCATAACAACGCCCCGGCGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAACAACATCGCCATTTGGCTGTCTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAg                                   <  2:76700/141‑1 (MQ=255)                                                                                                              gACTTGATTCTGCCATAAAAAAGCCCCGACGAGAcggggcttttttatggcagaatcaagtcatccccctcaattaacaaggataggttgtgaacggtgaattgatttgggttctttcattactggccgttgccatcgtcttg                                   <  1:73509‑M2/143‑110 (MQ=255)                                                                                                                 ttGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGCACAAATCGATCTCATTCAAgcg                                >  1:273687/1‑143 (MQ=255)                                                                                                                 ttGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGgcg                                >  1:467696/1‑143 (MQ=255)                                                                                                                   tatccTGACATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCAGTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGcgcg                              <  2:382439/139‑1 (MQ=255)                                                                                                                   gATTGTGCCAGAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTGCACTGAATAATAACATCGCCATGTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGcgcg                              <  2:147079/143‑1 (MQ=255)                                                                                                                   gATTCTGCCATAAAAAAGCCCCGACGAGAcggggcttttttatggcagaatcaagtcatccccctcaattaacaaggataaattgtgaacggtgaattgacttgggttctttcattactggccgttgccatcgactcgtttgc                              <  1:321350‑M2/143‑115 (MQ=255)                                                                                                                   gATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGcgcg                              <  2:546726/143‑1 (MQ=255)                                                                                                                    aTTCCGCCATAAAAACGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCgg                             <  1:495979/143‑1 (MQ=255)                                                                                                                     ttCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCGCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCggg                            <  2:494925/143‑1 (MQ=255)                                                                                                                          ccATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATc                       >  2:732328/1‑143 (MQ=255)                                                                                                                                  aaGCCCCGACGAGAcggggcttttttatggcagaatcaagtcatccccctcaattaacaaggataagttgtgaacggtgaattgatttgggttctttcattactggccgttgccatcgtcttgtttgcgacgggcagagtgcg               <  1:36235‑M2/143‑130 (MQ=255)                                                                                                                                        cgacgaTGCGGGGCCAAATCCTTATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTaa         <  2:129350/143‑1 (MQ=255)                                                                                                                                        cgacgaGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGACTACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTaa         <  2:176063/143‑1 (MQ=255)                                                                                                                                          acgaGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTAAcc       <  1:748743/143‑1 (MQ=255)                                                                                                                                           cgaGACAGGGCTAGATCATGATCAGGTGTGTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTAACCg      <  2:739386/143‑1 (MQ=255)                                                                                                                                              gaCGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGGTAACCGCaa   >  1:809909/1‑143 (MQ=255)                                                                                                                                               aCGGGTCTAAATCATGATCAGGTGTTTCACTGAATAATATCATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCATACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTAACCGCAat  <  2:638396/143‑1 (MQ=255)                                                                                                                                               aCGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTAACCGCAat  <  2:415324/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                               CATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTAACCGCAAT  >  NC_000913/2411271‑2411555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.