| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2630411 | 29 (0.690) | 3 (0.070) | 3/252 | NT | 9.1% | coding (86/540 nt) | yfgI | nalidixic acid resistance protein YfgI |
| ? | NC_000913 | = 2630423 | 32 (0.790) | coding (98/540 nt) | yfgI | nalidixic acid resistance protein YfgI | |||||
ACGCGTATTCAGCCAAATACCAAATGTCCTGAAAAGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACAAAAGAGCGGCAACG > NC_000913/2630269‑2630550 | aCGCGTATTCAGCCAAATACCAAATGTCCTGAAAAGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGT > 1:799868‑M1/1‑143 (MQ=255) gcgTATTCAGCCAAATACCAAATCTCCTGAAAAGATCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCg < 2:78621/143‑1 (MQ=255) cTGAAAAGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTACAAAt > 2:530636/1‑143 (MQ=255) tGAAAAGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACGCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATg < 2:101712/143‑1 (MQ=255) gAAAAGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTTCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGa < 1:573531/143‑1 (MQ=255) aaaaGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGaa < 2:369506/143‑1 (MQ=255) aaaGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAag > 2:179181/1‑143 (MQ=255) agagCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTtccgcttctgcgacagcagagagttgatcctgca < 1:305546‑M1/143‑35 (MQ=255) taataaTCAGGCGGAGTCATGAAGAAAGTGTGTCTTTGCGCCATCTTAGCCTGCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAg < 2:737394/143‑1 (MQ=255) aataatCAGGAGGAGGCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCAGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATTAGGAGCaaaag > 2:695757/1‑141 (MQ=255) ggaggaGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATGGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGa < 2:782149/143‑1 (MQ=255) tGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTCAAAATGACGAGCCAACGCAGCATGACGAATGCGTc > 2:504294/1‑143 (MQ=255) tGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTACTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTc > 1:413271/1‑143 (MQ=255) agaaAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCGAGGTAACAATGAAGCGCAAAGGCAGCAGGACGAATGGGTcgag > 1:219806/1‑141 (MQ=255) gTTTTTCTTTGCGCCATCTTAGCCTCCGTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAgcg < 2:603126/143‑1 (MQ=255) gTTCTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAgcg < 1:242870/143‑1 (MQ=255) tttCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCaa < 1:653855/143‑1 (MQ=255) ttggcgcCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAgg < 1:272165/140‑1 (MQ=255) aTCTTAGCCCCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCa < 1:239687/143‑1 (MQ=255) tCTTAGCCCCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAg < 1:347736/143‑1 (MQ=255) ttAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCa > 1:314643/1‑143 (MQ=255) tCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTATCGCAGCAGCGGAACAGCAAGGTAAAAATGACGAGCAAAGGCCGCATGACGAATGGGTCGCGGAGCGCAACCGGGAAATCCAGCAAGAGAAGCAACGTcgcg > 1:783692/1‑143 (MQ=255) tCGCCGCATCAGTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGcc < 1:437244/143‑1 (MQ=255) cTCATCATTGCAGGATCAACTCTCTGCTGTtccgcttctgcgacagcagagagttgatcctgcaatgatgag < 1:47795‑M1/72‑43 (MQ=255) cTCATCATTGCAGGATCAACTCTCTGCTGTtccgcttctgcgacagcagagagttgatcctgcaatgatgag > 2:47795‑M1/1‑30 (MQ=255) cTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAacagcagagagttgatcctgcaatgatgag > 2:47795‑M2/1‑42 (MQ=255) cTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAacagcagagagttgatcctgcaatgatgag < 1:47795‑M2/72‑31 (MQ=255) cTCATCATTACAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAACAACAACGGCAGCATGACGAATGGGTCGCGTCGGGCAACAGGTAGATCCAGCAAGAGAAACGACGTCGCGCAAACGcacacc > 2:673648/1‑141 (MQ=255) tGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAacagcagagagttgatcctgcaatgatgaggcgatagccggatagcttaaggaggctaagatggcgcaaagaaaaactttcttcatgactcctcctgattattagctct < 1:305546‑M2/143‑110 (MQ=255) gCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACCAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCCCAAATGCCCAGGCcgccgcga > 2:753098/1‑141 (MQ=255) ggATCAACTCTCTGCTGTCGCAGAAGCGGATCAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGTTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACa < 1:588361/143‑1 (MQ=255) gATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACaa > 1:177070/1‑143 (MQ=255) aTCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTaaaaca > 1:593099/1‑139 (MQ=255) tCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACaaaa < 1:750762/143‑1 (MQ=255) tCAACGCGCTGCTGGCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCCTGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACaaaa < 1:281351/143‑1 (MQ=255) ccAAGTCTCAGCTGTCGCAGGAGCGGAACAGCAAGGTAAACATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACaaaa < 2:485489/142‑1 (MQ=255) ctctctGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAAGGCCCAGGCCGCCGCTAACAAAAGAGc > 2:576975/1‑143 (MQ=255) ctgTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTACCAAAAGAGCGGCAACg > 1:803820/1‑143 (MQ=255) | ACGCGTATTCAGCCAAATACCAAATGTCCTGAAAAGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACAAAAGAGCGGCAACG > NC_000913/2630269‑2630550 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |