New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2630411	29 (0.690)	3 (0.070)	3/252	NT	9.1%	coding (86/540 nt)	yfgI	nalidixic acid resistance protein YfgI
	?	NC_000913	= 2630423	32 (0.790)					coding (98/540 nt)	yfgI	nalidixic acid resistance protein YfgI

CTGAAAAGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACAAAAGAGCGGCAACGGCAGCGGCA  >  NC_000913/2630297‑2630559                                                                                                                               |                                                                                                                                         cTGAAAAGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTACAAAt                                                                                                                          >  2:530636/1‑143 (MQ=255)  tGAAAAGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACGCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATg                                                                                                                         <  2:101712/143‑1 (MQ=255)   gAAAAGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTTCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGa                                                                                                                        <  1:573531/143‑1 (MQ=255)    aaaaGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGaa                                                                                                                       <  2:369506/143‑1 (MQ=255)     aaaGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAag                                                                                                                      >  2:179181/1‑143 (MQ=255)            taataaTCAGGCGGAGTCATGAAGAAAGTGTGTCTTTGCGCCATCTTAGCCTGCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAg                                                                                                               <  2:737394/143‑1 (MQ=255)             aataatCAGGAGGAGGCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCAGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATTAGGAGCaaaag                                                                                                              >  2:695757/1‑141 (MQ=255)                     ggaggaGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATGGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGa                                                                                                      <  2:782149/143‑1 (MQ=255)                               tGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTCAAAATGACGAGCCAACGCAGCATGACGAATGCGTc                                                                                            >  2:504294/1‑143 (MQ=255)                               tGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTACTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTc                                                                                            >  1:413271/1‑143 (MQ=255)                                  agaaAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCGAGGTAACAATGAAGCGCAAAGGCAGCAGGACGAATGGGTcgag                                                                                         >  1:219806/1‑141 (MQ=255)                                       gTTTTTCTTTGCGCCATCTTAGCCTCCGTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAgcg                                                                                    <  2:603126/143‑1 (MQ=255)                                       gTTCTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAgcg                                                                                    <  1:242870/143‑1 (MQ=255)                                          tttCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCaa                                                                                 <  1:653855/143‑1 (MQ=255)                                              ttggcgcCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAgg                                                                             <  1:272165/140‑1 (MQ=255)                                                      aTCTTAGCCCCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCa                                                                     <  1:239687/143‑1 (MQ=255)                                                       tCTTAGCCCCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAg                                                                    <  1:347736/143‑1 (MQ=255)                                                         ttAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCa                                                                  >  1:314643/1‑143 (MQ=255)                                                                          tCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTATCGCAGCAGCGGAACAGCAAGGTAAAAATGACGAGCAAAGGCCGCATGACGAATGGGTCGCGGAGCGCAACCGGGAAATCCAGCAAGAGAAGCAACGTcgcg                                                 >  1:783692/1‑143 (MQ=255)                                                                                  tCGCCGCATCAGTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGcc                                         <  1:437244/143‑1 (MQ=255)                                                                                      cTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAacagcagagagttgatcctgcaatgatgag                                                                                                            <  1:47795‑M2/72‑31 (MQ=255)                                                                                      cTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAacagcagagagttgatcctgcaatgatgag                                                                                                            >  2:47795‑M2/1‑42 (MQ=255)                                                                                      cTCATCATTACAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAACAACAACGGCAGCATGACGAATGGGTCGCGTCGGGCAACAGGTAGATCCAGCAAGAGAAACGACGTCGCGCAAACGcacacc                                     >  2:673648/1‑141 (MQ=255)                                                                                              tGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAacagcagagagttgatcctgcaatgatgaggcgatagccggatagcttaaggaggctaagatggcgcaaagaaaaactttcttcatgactcctcctgattattagctct                             <  1:305546‑M2/143‑110 (MQ=255)                                                                                               gCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACCAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCCCAAATGCCCAGGCcgccgcga                            >  2:753098/1‑141 (MQ=255)                                                                                                  ggATCAACTCTCTGCTGTCGCAGAAGCGGATCAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGTTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACa                         <  1:588361/143‑1 (MQ=255)                                                                                                   gATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACaa                        >  1:177070/1‑143 (MQ=255)                                                                                                    aTCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTaaaaca                       >  1:593099/1‑139 (MQ=255)                                                                                                     tCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACaaaa                      <  1:750762/143‑1 (MQ=255)                                                                                                     tCAACGCGCTGCTGGCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCCTGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACaaaa                      <  1:281351/143‑1 (MQ=255)                                                                                                     ccAAGTCTCAGCTGTCGCAGGAGCGGAACAGCAAGGTAAACATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACaaaa                      <  2:485489/142‑1 (MQ=255)                                                                                                         ctctctGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAAGGCCCAGGCCGCCGCTAACAAAAGAGc                  >  2:576975/1‑143 (MQ=255)                                                                                                                ctgTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTACCAAAAGAGCGGCAACg           >  1:803820/1‑143 (MQ=255)                                                                                                                     tcataaGCGTAACAGCAAAATAAAAATAAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACAAAAGAGCGGCAACGGCAGc      <  1:179181/139‑1 (MQ=255)                                                                                                                         aaGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACAAAAGAGCGGCAACGGCAGCGGcg  >  1:258120/1‑142 (MQ=255)                                                                                                                               |                                                                                                                                         CTGAAAAGAGCTAATAATCAGGAGGAGTCATGAAGAAAGTTTTTCTTTGCGCCATCTTAGCCTCCTTAAGCTATCCGGCTATCGCCTCATCATTGCAGGATCAACTCTCTGCTGTCGCAGAAGCGGAACAGCAAGGTAAAAATGAAGAGCAAAGGCAGCATGACGAATGGGTCGCGGAGCGCAACAGGGAAATCCAGCAAGAGAAGCAACGTCGCGCAAATGCCCAGGCCGCCGCTAACAAAAGAGCGGCAACGGCAGCGGCA  >  NC_000913/2630297‑2630559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.