| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2455052 = | 49 (0.890) | 4 (0.080) | 4/246 | NT | 8.0% | intergenic (‑51/+31) | yfcU/yfcV | putative outer membrane usher protein YfcU/putative fimbrial protein YfcV |
| ? | NC_000913 | 2455076 = | 46 (0.900) | intergenic (‑75/+7) | yfcU/yfcV | putative outer membrane usher protein YfcU/putative fimbrial protein YfcV | |||||
TAAAGGCAAAGCGAAGCAGACTCTGAACTTTAAAGCCTGGCTGGTCGGCGCAGCTGATGCGCCAGATCTGGGTAATTTCGAAGCAAATACCACCTTCCAGATTACTTACCTGTAAGGCATACCCCCATAGCGACACTGCTATGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2455197‑2455052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctatggggGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTGCCTTTATTAGTGGCAGTATC > NC_000913/2455076‑2455211 TAAAGGCAAGCGGAAGCAGACTCTGAACTTTAAAGCCTGGCTGGTCGGCGCAGCTGATGCGCCAGATCTGGGTAATTTCGAAGCAAATACCACCTTCCAGATTACTTACCTGTAAGGCATACCCCCATAGCGACACTGCTATG < 2:212671/143‑1TAAAGGCAACGCGAAGCAGACTCTGCACGTTAAAGCCTGGCTGGTCGGCGCAGCTGATGCGCCAGATCTGGGTAATTTCGAAGCAAATACCACCTTCCAGATTACTTACCTGTAAGGCATACCCCCATAGCGACACTGCTATG < 1:56522/143‑1 TTACCTGTAAGGCATACCCCCATAGCGACACTGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAA > 1:832178/1‑134 TTACCTGTAAGGCATACCCCCATAGCGACACTGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAA < 2:832178/134‑1 CCCCATAGCGACACTGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCGTTAAAGTTCAGAGCCTGCTTCGCTTTGCCT > 2:787596/1‑143 CCATAGCGACACTGCTATGGGGGTATGCCTTACAGGTAAGTAATCTGGCAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTCAAGTTCAGAGTCTGCTTCGCTTTGCCTTT > 2:29587/1‑143 ACACTGCTAT‑GGGGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTGCCTTTATGAGTGGC > 1:783424/1‑143 tgGCTATGGGTGTGTGCCTTCCAGGTAAGTAATCTGGTAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTGCCTTTATTAGTGGCAG < 2:1018797/141‑1 TATGGGGGTATGCCTTACAGGCAAGTAATCTGGAAGGTGGTATTTGCGTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAACTTCAGAGTCTGCTTCGCTTTGACTCTATTAGTGGCAGTGTC > 2:621820/1‑143 TAAAGGCAAAGCGAAGCAGACTCTGAACTTTAAAGCCTGGCTGGTCGGCGCAGCTGATGCGCCAGATCTGGGTAATTTCGAAGCAAATACCACCTTCCAGATTACTTACCTGTAAGGCATACCCCCATAGCGACACTGCTATGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2455197‑2455052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctatggggGTATGCCTTACAGGTAAGTAATCTGGAAGGTGGTATTTGCTTCGAAATTACCCAGATCTGGCGCATCAGCTGCGCCGACCAGCCAGGCTTTAAAGTTCAGAGTCTGCTTCGCTTTGCCTTTATTAGTGGCAGTATC > NC_000913/2455076‑2455211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |