| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 46077 | 35 (0.640) | 3 (0.060) | 3/250 | NT | 8.0% | coding (271/1332 nt) | yaaU | putative transporter YaaU |
| ? | NC_000913 | = 46089 | 36 (0.690) | coding (283/1332 nt) | yaaU | putative transporter YaaU | |||||
ACTGACGCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTACCCG > NC_000913/45935‑46219 | aCTGACGCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGCTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCATCATTGATATCA > 1:580051‑M1/1‑143 (MQ=255)aCTGACGCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGAGCCGGAACGCTCGCAGGGCTGTTCGTCGGGACATCGCTGTATGGTTATACTTCAGATAAGCTCGGACGGTGCAAAGTGTTCCGACTGGATatca > 2:11395/1‑143 (MQ=255) tGACGCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATatcatc < 2:938188/143‑1 (MQ=255) tGACGCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCCGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATatcatc < 1:148174/143‑1 (MQ=255) ggACGCTGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATatcatc < 1:659843/142‑1 (MQ=255) gACGCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGGTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCg > 2:479309/1‑143 (MQ=255) gcgcTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTGCGGTGGCACCTCGCTGTTTGGTTATATGTCCGATAAAGTCGGACGGCGCCAAATGTTGCTACTTGATATCATAGCCATCgg > 2:1000495/1‑143 (MQ=255) cgcgGAGACTGTCCGCTGCCTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGc < 2:305091/143‑1 (MQ=255) cTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAGCGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGt > 1:883634‑M2/1‑142 (MQ=255) aaCTGGACGCTGACTGGATTGGCTTGCTGGGCGCGAGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCAcgccgatggcgatgata < 1:1001588‑M1/143‑18 (MQ=255) tGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACACCGCCGTTTGTGTAAACCTCCGAGAAAGTCGGACGGCGCAAAATGTTCATCATTGATATCATCGCCATCGGCGTGATATCGGTGGcga > 1:446204/1‑143 (MQ=255) ttGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGAtgttt < 2:570326/143‑1 (MQ=255) ttGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCAcgccgatggcgatgatatcaatgaggaa < 1:366920‑M1/131‑29 (MQ=255) ttGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCAcgccgatggcgatgatatcaatgaggaa > 2:366920‑M1/1‑103 (MQ=255) cggggCGCGGGCACGCTCGCGGGGCTGTGCGTTGTCACGTCGCGGTTTGGTTATCTTTCCGATAAAGTCGGCCGGCGCAAAATGTTCCTCATTGATATTATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATc < 2:80918/141‑1 (MQ=255) gggAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCCCCATCGGCGTGATATCGGTCGCGACGATGTTTGTCTCGCGCCCCGTcc > 2:690997/1‑142 (MQ=255) gggAACGCTCGCCGCGCGGTTGGTTGGCAGAGCGCTGGTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATAATCGCCATCGGCGTGATATCGGTGGACACGATGTTTGCATCATccccgggcg > 2:428318/1‑138 (MQ=255) tCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGGTTGTTTGCGCCCCCGCCGAGctgctg > 2:275590/1‑143 (MQ=255) tCGCCGGGCTGTTCGTTGGCACATCGATGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATAGGCGTGATATCGGTGGCGACGATGTTATTTTCATCCCCCGTCGAACTGTTg > 2:107957/1‑143 (MQ=255) cGCCGGGCTGTTCGTTGGCACATCTCTGCTTGGTTATATTGCCGAGAAAGTCGGACGGCGCAAAATGTTTCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTgg < 1:567218/143‑1 (MQ=255) ggCGGTTCGTGGGCGGAGCGGTGTTTGGTTGTGTTTGGGGGAGAGTCGGCCGGCGCAAAGTGTTCCTCCTAGAATCCGTCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATg < 2:802116/143‑1 (MQ=255) tGTTCGTTGGAACTTCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCCCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCgg < 2:914927/143‑1 (MQ=255) ttCGTTGGCACATCGCTGTTTGGTTATATTTCCGTTAAGGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGt < 2:294641/143‑1 (MQ=255) gTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGtcat > 2:53539/1‑140 (MQ=255) ttGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCACAATGCTCCTCATTGATATCATCGCCATCGGCGTGATAGCGGTTGCCACGATGTTTGTTTCATCACCCGGCGGACCGTTGGTGATGCGGGtcagt > 2:97955/1‑139 (MQ=255) tCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCAt > 1:547671/1‑143 (MQ=255) ggtGTTTGGGTATATTTCCGATGAGGTCGGGCGGCGCTGAATGTTCCGCATTGATATGATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTg < 2:772787/141‑1 (MQ=255) gCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGGACTTATCGGCATTg > 1:43136/1‑143 (MQ=255) tttGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCAt > 2:930093/1‑143 (MQ=255) tGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCg < 1:930093/143‑1 (MQ=255) ttATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTg > 1:771195/1‑143 (MQ=255) ttATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCAGTCGAACTGTTGGTGATGCGGGTATTTGTCGGCATTGTccgcggga > 2:687985/1‑136 (MQ=255) gatcgttCCGATCACGTCGGCCGGCGCAAAATGCTCCTCATTGATCTCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGc < 1:112755/138‑1 (MQ=255) atTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTCATCGGCATTGTCATCGGTCCAGa > 1:572514/1‑143 (MQ=255) tttCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGAt > 1:929831/1‑143 (MQ=255) tttCCGATAAAGTCGGACGGCGCAAAATGTTCCTCAGTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTGATCGGTGCAGAt > 1:220104/1‑143 (MQ=255) cGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATc > 1:800002/1‑143 (MQ=255) gcgcGAAATGTCCCTGAGTGGTGTTAGCGGCATCGGCGTGGTATCGGTGGCGACGATGTCTGTTTCATCCCCCTTCGAACGGGTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCaa < 2:521180/143‑1 (MQ=255) gcacggTTCCTCATTGATATCATCGCCGTCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGAt < 1:442907/138‑1 (MQ=255) tgtgCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCACCGGTAGAACTTTCGGTGATGCGGTTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAcc < 1:245571/143‑1 (MQ=255) ttCCTCATTGATATCATCGCCATCGGCGtgatatcaatgaggaacattttgcgccgtccgactttatcggaaatataaccaaacagcgatgtgccaacgaacagcccggcgagcgttcccgcgcccagcaa > 2:366920‑M2/1‑28 (MQ=255) ttCCTCATTGATATCATCGCCATCGGCGtgatatcaatgaggaacattttgcgccgtccgactttatcggaaatataaccaaacagcgatgtgccaacgaacagcccggcgagcgttcccgcgcccagcaa < 1:366920‑M2/131‑104 (MQ=255) tCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATTCCATCGCCACCTCAATGATCCCCGCGTtc > 1:182156/1‑143 (MQ=255) tCATTGATATCATCGCCATCGACGTGATATCGGTGGCGACGATGTTTGTTTCATCAACCGTCGAACGGTTGGTGATGCGGGTCCTTATCGGCATCGTCATCGGTGCGGATTATCCCAACGCCACCTGAATGCGCCCCGCGTtc > 2:404561/1‑143 (MQ=255) aTTGATATCATCGCCAGCGGCGTGACATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTTGTGATGCGGGTACTCATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTtctc < 1:799460/143‑1 (MQ=255) ttGACATCAGCGCCGGCGGCGTGATAGCGGGGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTcc < 2:870694/143‑1 (MQ=255) tGATTTCATCGCCCTCGGCGTGAGATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCa < 1:263640/143‑1 (MQ=255) tatCATCGCCATCGGCGtgatatcaatgaggaacattttgcgccgtccgactttatcggaaatataaccaaacagcgatgtgccaacgaacagcccggcgagcgttctcgcgcccagcaagccaatccagtcagcgtccagtt < 1:1001588‑M2/143‑127 (MQ=255) atcGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTGATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTACCCg > 1:555273/1‑143 (MQ=255) acgccgatggcgatgatatcaatgaggaacattttgcgccgtccgactttatcggaaatataaccaaacagcgatgtgccaacgaacagcccggcgagcgctcccgcgcccagcaagccaatccagtcagcgtccagtttcag > 1:883634‑M1/1‑1 (MQ=255) | ACTGACGCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTACCCG > NC_000913/45935‑46219 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |