New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 46077	35 (0.640)	3 (0.060)	3/250	NT	8.0%	coding (271/1332 nt)	yaaU	putative transporter YaaU
	?	NC_000913	= 46089	36 (0.690)					coding (283/1332 nt)	yaaU	putative transporter YaaU

CTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTACCCGTCAGCGGGC  >  NC_000913/45948‑46228                                                                                                                                              |                                                                                                                                            cTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAGCGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGt                                                                                                                                            >  1:883634‑M2/1‑142 (MQ=255)               tGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACACCGCCGTTTGTGTAAACCTCCGAGAAAGTCGGACGGCGCAAAATGTTCATCATTGATATCATCGCCATCGGCGTGATATCGGTGGcga                                                                                                                              >  1:446204/1‑143 (MQ=255)                       ttGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGAtgttt                                                                                                                      <  2:570326/143‑1 (MQ=255)                               cggggCGCGGGCACGCTCGCGGGGCTGTGCGTTGTCACGTCGCGGTTTGGTTATCTTTCCGATAAAGTCGGCCGGCGCAAAATGTTCCTCATTGATATTATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATc                                                                                                              <  2:80918/141‑1 (MQ=255)                                       gggAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCCCCATCGGCGTGATATCGGTCGCGACGATGTTTGTCTCGCGCCCCGTcc                                                                                                      >  2:690997/1‑142 (MQ=255)                                       gggAACGCTCGCCGCGCGGTTGGTTGGCAGAGCGCTGGTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATAATCGCCATCGGCGTGATATCGGTGGACACGATGTTTGCATCATccccgggcg                                                                                                      >  2:428318/1‑138 (MQ=255)                                               tCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGGTTGTTTGCGCCCCCGCCGAGctgctg                                                                                              >  2:275590/1‑143 (MQ=255)                                               tCGCCGGGCTGTTCGTTGGCACATCGATGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATAGGCGTGATATCGGTGGCGACGATGTTATTTTCATCCCCCGTCGAACTGTTg                                                                                              >  2:107957/1‑143 (MQ=255)                                                cGCCGGGCTGTTCGTTGGCACATCTCTGCTTGGTTATATTGCCGAGAAAGTCGGACGGCGCAAAATGTTTCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTgg                                                                                             <  1:567218/143‑1 (MQ=255)                                                     ggCGGTTCGTGGGCGGAGCGGTGTTTGGTTGTGTTTGGGGGAGAGTCGGCCGGCGCAAAGTGTTCCTCCTAGAATCCGTCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATg                                                                                        <  2:802116/143‑1 (MQ=255)                                                        tGTTCGTTGGAACTTCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCCCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCgg                                                                                     <  2:914927/143‑1 (MQ=255)                                                          ttCGTTGGCACATCGCTGTTTGGTTATATTTCCGTTAAGGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGt                                                                                   <  2:294641/143‑1 (MQ=255)                                                             gTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGtcat                                                                                >  2:53539/1‑140 (MQ=255)                                                              ttGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCACAATGCTCCTCATTGATATCATCGCCATCGGCGTGATAGCGGTTGCCACGATGTTTGTTTCATCACCCGGCGGACCGTTGGTGATGCGGGtcagt                                                                               >  2:97955/1‑139 (MQ=255)                                                                      tCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCAt                                                                       >  1:547671/1‑143 (MQ=255)                                                                        ggtGTTTGGGTATATTTCCGATGAGGTCGGGCGGCGCTGAATGTTCCGCATTGATATGATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTg                                                                     <  2:772787/141‑1 (MQ=255)                                                                        gCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGGACTTATCGGCATTg                                                                     >  1:43136/1‑143 (MQ=255)                                                                            tttGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCAt                                                                 >  2:930093/1‑143 (MQ=255)                                                                              tGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCg                                                               <  1:930093/143‑1 (MQ=255)                                                                                 ttATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTg                                                            >  1:771195/1‑143 (MQ=255)                                                                                 ttATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCAGTCGAACTGTTGGTGATGCGGGTATTTGTCGGCATTGTccgcggga                                                            >  2:687985/1‑136 (MQ=255)                                                                                  gatcgttCCGATCACGTCGGCCGGCGCAAAATGCTCCTCATTGATCTCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGc                                                           <  1:112755/138‑1 (MQ=255)                                                                                     atTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTCATCGGCATTGTCATCGGTCCAGa                                                        >  1:572514/1‑143 (MQ=255)                                                                                      tttCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGAt                                                       >  1:929831/1‑143 (MQ=255)                                                                                      tttCCGATAAAGTCGGACGGCGCAAAATGTTCCTCAGTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTGATCGGTGCAGAt                                                       >  1:220104/1‑143 (MQ=255)                                                                                          cGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATc                                                   >  1:800002/1‑143 (MQ=255)                                                                                                         gcgcGAAATGTCCCTGAGTGGTGTTAGCGGCATCGGCGTGGTATCGGTGGCGACGATGTCTGTTTCATCCCCCTTCGAACGGGTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCaa                                    <  2:521180/143‑1 (MQ=255)                                                                                                             gcacggTTCCTCATTGATATCATCGCCGTCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGAt                                <  1:442907/138‑1 (MQ=255)                                                                                                                 tgtgCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCACCGGTAGAACTTTCGGTGATGCGGTTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCAcc                            <  1:245571/143‑1 (MQ=255)                                                                                                                   ttCCTCATTGATATCATCGCCATCGGCGtgatatcaatgaggaacattttgcgccgtccgactttatcggaaatataaccaaacagcgatgtgccaacgaacagcccggcgagcgttcccgcgcccagcaa                                      >  2:366920‑M2/1‑28 (MQ=255)                                                                                                                   ttCCTCATTGATATCATCGCCATCGGCGtgatatcaatgaggaacattttgcgccgtccgactttatcggaaatataaccaaacagcgatgtgccaacgaacagcccggcgagcgttcccgcgcccagcaa                                      <  1:366920‑M2/131‑104 (MQ=255)                                                                                                                       tCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATTCCATCGCCACCTCAATGATCCCCGCGTtc                      >  1:182156/1‑143 (MQ=255)                                                                                                                       tCATTGATATCATCGCCATCGACGTGATATCGGTGGCGACGATGTTTGTTTCATCAACCGTCGAACGGTTGGTGATGCGGGTCCTTATCGGCATCGTCATCGGTGCGGATTATCCCAACGCCACCTGAATGCGCCCCGCGTtc                      >  2:404561/1‑143 (MQ=255)                                                                                                                         aTTGATATCATCGCCAGCGGCGTGACATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTTGTGATGCGGGTACTCATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTtctc                    <  1:799460/143‑1 (MQ=255)                                                                                                                          ttGACATCAGCGCCGGCGGCGTGATAGCGGGGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTcc                   <  2:870694/143‑1 (MQ=255)                                                                                                                           tGATTTCATCGCCCTCGGCGTGAGATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCa                  <  1:263640/143‑1 (MQ=255)                                                                                                                              tatCATCGCCATCGGCGtgatatcaatgaggaacattttgcgccgtccgactttatcggaaatataaccaaacagcgatgtgccaacgaacagcccggcgagcgttctcgcgcccagcaagccaatccagtcagcgtccagtt               <  1:1001588‑M2/143‑127 (MQ=255)                                                                                                                               ctcttcGCCAGCGGCGTGATATCGGTGGCGACGATGTTTGTTCCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTAc              <  1:563345/139‑1 (MQ=255)                                                                                                                                  atcGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTGATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTACCCg           >  1:555273/1‑143 (MQ=255)                                                                                                                                    cGCCATCGGCGTGATATCGGTGGCGACGATGTTCGTTTCATCCCCCGTCGACCTGTTGGTGATGCGGGGACTTATCGGCCTTGCCATCGGAGCAGCTTCTCCCCTCGCCGCCACAATGATCACCGAGTTCTCACGTACCCGTc         >  2:284818/1‑143 (MQ=255)                                                                                                                                           ggCGGGATGTCGGTGGCGACGATGTTTGGTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTACCCGTCAGCGGGc  <  1:890595/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                            CTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTACCCGTCAGCGGGC  >  NC_000913/45948‑46228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.