New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1598588	44 (0.800)	3 (0.060)	3/248	NT	6.9%	intergenic (‑502/+29)	yneO/lsrK	AIDA‑I family autotransporter YneO/autoinducer‑2 kinase
	?	NC_000913	= 1598600	40 (0.780)					intergenic (‑514/+17)	yneO/lsrK	AIDA‑I family autotransporter YneO/autoinducer‑2 kinase

CTTAATGCTTTAAGAAAAATAGCAATTTTCCCTTGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGATCAACCAGCCCCAGCTGATCCTGATAAACTGCCTGCCACTTATCGCGTGAATCCTGATAAAGTTCATG  >  NC_000913/1598449‑1598727                                                                                                                                            |                                                                                                                                            cTTAATGCTTTAAGAAAAATAGCAATTTTCCCTTGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACggc                                                                                                                                          >  2:200842/1‑142 (MQ=255)  ttAATGCTTTAAGAAAAATAGCAATTTTCCCTTGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGtc                                                                                                                                         <  1:657583/143‑1 (MQ=255)      tGCTTGAAGAAAAATAGCAATTTTCCCTTGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGtcatca                                                                                                                                     <  2:900173/143‑1 (MQ=255)       gCTTTAAGAAAAAGAGCAATTTTCCCTTGAATATCGTACTGGTGACGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTcatcat                                                                                                                                    <  2:340524/143‑1 (MQ=255)         tttAAGAAAAATAGCAATTTTCCCTTGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCatga                                                                                                                                  >  1:695312/1‑143 (MQ=255)            aaGAAAAATAGCAATTTTCCCTTGAATATCGTACTGGTGATGGAACGAGGAATATGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGACATTAGGATTAATATACACAAAAAGTAACAGCAACGGgcagcaggtgga                                                                                                                               >  2:365943/1‑137 (MQ=255)             aGAAAAATAGCAATTTTCCCTTGAATATCGTACTGGAGATGGAACGATGAAACTGAAAACTGGCATTTAACAAGACAGCTCTAAAAGAAGAGAAATAAGAATAACGATACTCAAAAACTAAAAGGCAAGAACAACATGAcgta                                                                                                                              >  2:349226/1‑142 (MQ=255)              taaaaatAGCAATTTCCCCTTGAATATCGTACTTGTGATGGGACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATTCTCAAAAACTAACAGCCACatcatgatgaccgtgg                                                                                                                             <  1:1031911‑M1/142‑17 (MQ=255)               aaaaaTATCAATTTTCCCTTGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATgtggc                                                                                                                            >  1:742648‑M2/1‑138 (MQ=255)                aataTAGCCATGTTCCCTGGAAGATCGTACTGGGGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCt                                                                                                                           <  1:11202/140‑1 (MQ=255)                       cAATTTTCCCTTGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATg                                                                                                                    >  1:261111/1‑143 (MQ=255)                        aaagtgcccTTCAATATCGTAGTGGTGAGGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGTAATAATAATAACTATACTCAAAAACTAACAGCCACGGTCAGCATGATGTGGCTGTCAATGa                                                                                                                   <  1:136647/137‑1 (MQ=255)                         atcttCCCTTGAATATCGTACTGGTGATGGAACGATGACTCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGaa                                                                                                                  <  1:565169/140‑1 (MQ=255)                          ttttCCCTTGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGaaa                                                                                                                 <  1:271574/143‑1 (MQ=255)                          ttgtCCCTTGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGaaa                                                                                                                 <  1:571082/140‑1 (MQ=255)                           tttCCCTTGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACatcatgatgaccgtggctgttagtttttg                                                                                                                <  1:859996‑M1/143‑30 (MQ=255)                                 ttGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAACAGAAGGGAAAAAAGCACAACTATACTCAAAAACTAACAGCCACGGCCATCATGATGTGACTGTCAATGAAACCATAAc                                                                                                          >  2:319287/1‑143 (MQ=255)                                 ttGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAAc                                                                                                          >  1:510889/1‑143 (MQ=255)                                 ttGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAAc                                                                                                          >  1:849556/1‑143 (MQ=255)                                 ttGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAAc                                                                                                          <  1:25178/143‑1 (MQ=255)                                           tACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGCATCTATAACCCAGGCGCtt                                                                                                >  1:70310/1‑143 (MQ=255)                                           tACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCtt                                                                                                >  1:55820/1‑143 (MQ=255)                                             cTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGACTAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTc                                                                                              <  1:557134/143‑1 (MQ=255)                                             cTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTc                                                                                              <  1:815126/143‑1 (MQ=255)                                                    tGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACatcatgatgaccgtggctgttagtttttgagtatagttattcttatttcccttc                                                                                       <  1:840892‑M1/143‑55 (MQ=255)                                                      gAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTACAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAacgac                                                                                     <  2:391571/143‑1 (MQ=255)                                                         ccaTGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGAcgtc                                                                                  <  2:879575/141‑1 (MQ=255)                                                            tGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAAGAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACgtcgtc                                                                               <  2:261899/143‑1 (MQ=255)                                                             gAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATCACGACGTCGTCa                                                                              >  2:649803/1‑143 (MQ=255)                                                                  tGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCa                                                                         >  1:138133/1‑143 (MQ=255)                                                                   gCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTGTCCATAACGACGTCGTCAGTCCAt                                                                        >  1:157912/1‑143 (MQ=255)                                                                     aaGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGa                                                                      <  2:510889/143‑1 (MQ=255)                                                                     aaGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGa                                                                      <  2:991128/143‑1 (MQ=255)                                                                     aaGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGa                                                                      <  1:161229/143‑1 (MQ=255)                                                                      aGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGAt                                                                     >  1:206435/1‑143 (MQ=255)                                                                       gcttgcttGTCACAAGCCAGCGCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGATc                                                                    <  2:900832/143‑1 (MQ=255)                                                                            cTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGATCAACCa                                                               <  2:382262/143‑1 (MQ=255)                                                                                    aaGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATGACGACGTCGTCAGTCCATGATCAACCAGCCCCAGc                                                       >  1:565330/1‑143 (MQ=255)                                                                                            tctAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATATGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGCTCACCCAGCACCAGCTGATCCTg                                               >  1:83339/1‑143 (MQ=255)                                                                                              tAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGATCAACCAGCCCCAGCTGATCCTGAt                                             <  2:973706/143‑1 (MQ=255)                                                                                                   gaagGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATgtggctgttagtttttgagtatagttattcttatttcccttcttttagagctggcttgttaaaagccagcttgcagattcatcgttcca                                        <  1:840892‑M2/143‑90 (MQ=255)                                                                                                     agGGAAATAAGAATAACTATACTCAAAAACTAACCGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCACGCGCTTTCCATAACGACGTCGTCAGTCCATGATCAACCAGCCCCAGCTGATCCTGATAAActgc                                      <  2:136485/143‑1 (MQ=255)                                                                                                     agGCAAATACGCATAACTCTTCGCAACAACTCACATCCACTGTCATCATGATGTGGCTGTCAATGAAACTAGAACCCATGCTCTTTCCATAACGACGTCGTCAGTCCATGATCAACCAGCCCCAGCTGATCCTGATAAActgc                                      <  2:550168/143‑1 (MQ=255)                                                                                                                aaTAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCCGTCCATGATCAACCAGCCCCGGCTGATCCTGATAAACTGCCTGCCACTTAt                           >  1:295224/1‑143 (MQ=255)                                                                                                                   aaCTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGATCAACCAGCCCCAGCTGATCCTGATAAACTGCCTGCCACTTATcgc                        <  1:94518/143‑1 (MQ=255)                                                                                                                    aCTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGATCAACCAGCCCCAGCTGCTCCTGATAAACTGCCTGCCCCCTATcgcg                       >  1:867703/1‑143 (MQ=255)                                                                                                                          cTCAAAAACTAACAGACACGGTCATCATGAAGTGGCTATCAATGAAACTATAACCCAGGCGCTTTCCATAAGGACATCGTCAGTCCATGATCAACAAGCCCCAGCTGAACCTGATAACCTGCCTGCCACTTATAGCGTAAATc                 >  2:291524/1‑143 (MQ=255)                                                                                                                           tCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGATCAACCAGCCCCAGCTGATCCTGATACACTGCCTGCCACTTATCGCGCGCATcc                >  2:962148/1‑143 (MQ=255)                                                                                                                            cAAAAACTAACAGCCACGGTCATCATGATgtggctgttagtttttgagtatagttattcttatttcccttcttttagagctggcttgttaaaagccagcttgcagattcatcgttccatcaccagtacgatattcaagggaaa               <  1:859996‑M2/143‑115 (MQ=255)                                                                                                                            cAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCTTAACGACGTCGTCAGTCCATGATAAAAAAGGCCCAGCTGAACAAGAGAAACTGCCGGCCACTTATAGCGTGAATGCt               >  2:508836/1‑143 (MQ=255)                                                                                                                            cAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTGTCCATAACGACGTCGCAAGTCCACGACCAACCAGCCCCCGCCGATCCAGACCACCTGACAACCACCCAACGCGTGAATccc               >  2:176198/1‑142 (MQ=255)                                                                                                                              aaaaCTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGATCAACCAGACCCAGCTGATCCCGATAAACTGCCTGCCACTTATCGCGTGAATCCTGa             >  2:448776/1‑143 (MQ=255)                                                                                                                                        gCCACatcatgatgaccgtggctgttagtttttgagtatagttattcttatttcccttcttttagagctggcttgttaaaagccagcttgcagattcatcgttccatcaccagtacgatattcaagggaaaattgatattttt   >  1:742648‑M1/1‑5 (MQ=255)                                                                                                                                         ccACGGTCATCATGATgtggctgttagtttttgagaatagttattcttatttcccttcttttagagctggcttgttaaaagccagcttgcagattcatcgtcccatcacaagtacgatattcaaggggaaattgctattttta  <  1:1031911‑M2/143‑128 (MQ=255)                                                                                                                                         ccACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGATCAACCAGCCCCAGCTGATCCTGATCAACTGCCTGCCACTTATCCCGTGAATCCTGATAAAGTTCATg  >  2:233953/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                            CTTAATGCTTTAAGAAAAATAGCAATTTTCCCTTGAATATCGTACTGGTGATGGAACGATGAATCTGCAAGCTGGCTTTTAACAAGCCAGCTCTAAAAGAAGGGAAATAAGAATAACTATACTCAAAAACTAACAGCCACGGTCATCATGATGTGGCTGTCAATGAAACTATAACCCAGGCGCTTTCCATAACGACGTCGTCAGTCCATGATCAACCAGCCCCAGCTGATCCTGATAAACTGCCTGCCACTTATCGCGTGAATCCTGATAAAGTTCATG  >  NC_000913/1598449‑1598727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.