New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3383284 =	40 (0.730)	3 (0.060)	3/240	NT	7.7%	intergenic (+17/+46)	degS/mdh	serine endoprotease/malate dehydrogenase
	?	NC_000913	3383314 =	36 (0.720)					intergenic (+47/+16)	degS/mdh	serine endoprotease/malate dehydrogenase

TCTGGAGACGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCG  >  NC_000913/3383144‑3383426                                                                                                                                             |                                                                                                                                               tctgGAGACGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTGGGGATGCGTGAGGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGGATATCCGGGAACCAATTAAGGCGTGCGCTcagaacaaa                                                                                                                                              >  1:121253/1‑143 (MQ=255) tctgGAGACGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCCCacaaaacaaa                                                                                                                                              >  2:1051919/1‑143 (MQ=255)   tgGAGACGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACaaaaa                                                                                                                                            >  1:740132/1‑143 (MQ=255)    cggcgtggaagagcgtaaatctatcggtaccctgagcgcatttgaacagaacgcgctggaaggtatgctggatacgctgaagaaagatatcgccctgggcgaagagttcgttaataagtaattgattagcggataataaaaaa                                                                                                                                           <  1:428591‑M1/6‑1 (MQ=255)      agaCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAACAAcc                                                                                                                                         >  1:380773/1‑143 (MQ=255)       gaCGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAAAATCCGGCAACCAATTAAGTCGTGCGCTCAAAACaaaaaccag                                                                                                                                        >  2:367097/1‑139 (MQ=255)       gaCGATGGATCAGGTGGCGGAAATTCGCCCTGGGTCGGTGATCCCTGTAGTAGTAATGCGCCATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCg                                                                                                                                        <  2:777191/143‑1 (MQ=255)         cGATGGAGCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGa                                                                                                                                      <  1:23599/143‑1 (MQ=255)          ggaagagcgtaaatctattggtaccctgagcgcatttgaacagaacgcgctggaaggtatgctggatacgctgaagaaagatatcgccctgggcgaagagttcgttaataagtaattgattagcggataatAAAAAACCGGAg                                                                                                                                     >  1:973190‑M1/132‑143 (MQ=255)                       gCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGt                                                                                                                        >  2:92577/1‑143 (MQ=255)                          gAAATGCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGtttt                                                                                                                     <  1:732933/143‑1 (MQ=255)                           aaaTTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGttttt                                                                                                                    <  2:835384/143‑1 (MQ=255)                               tCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTttatt                                                                                                                >  1:780571/1‑143 (MQ=255)                                   ccTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATcc                                                                                                            >  2:927841/1‑143 (MQ=255)                                    cgggTGCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCAGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCg                                                                                                           >  1:781872/3‑143 (MQ=255)                                            gTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTCCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCaa                                                                                                   <  1:366332/143‑1 (MQ=255)                                            gTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGCCGTGCGCTAAAAACAAAAAACCGGCGCCTGTGCTCCGGTCTTTTAGTATCCACTAATCaa                                                                                                   >  2:510125/1‑143 (MQ=255)                                                  cagaacgcgctggaaggtatgctggatacgctgaagaaagatatcgccctgggcgaagagttcgttaataagtaattgattagcggataatAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACtt                                                                                             <  2:732794‑M1/52‑1 (MQ=255)                                                    tGTCGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGGCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTGAAAACCAAACACCGGCGTCTGTGCTCCGGCTTTTTATTATCCGCTACTCCATTACttat                                                                                           >  2:959214/1‑143 (MQ=255)                                                    gaacgcgctggaaggtatgctggatacgctgaagaaagatatcgccctgggcgaagagttcgttaataagtaattgattagcggataatAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACttat                                                                                           >  1:732794‑M1/90‑143 (MQ=255)                                                      tagtagTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTACTCAATTACttattt                                                                                         >  1:233166/1‑142 (MQ=255)                                                        gttgtGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATACGGCAACCAATTAAGTCGTGCGCTCAAAACAAAATACCGGAGTTTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAAc                                                                                       <  2:37973/140‑1 (MQ=255)                                                        gtagtGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAAc                                                                                       >  1:302280/1‑143 (MQ=255)                                                           gtGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGGATATCCGGCAACCAATTAAGGCGTGCGCTCAAAACAAAAAACCGGAGACTGTGGTCCGGCTTTGTATTATCCGCTAATCAATTACTTATTAACGaa                                                                                    >  2:887180/1‑143 (MQ=255)                                                               tGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAActct                                                                                <  2:740132/143‑1 (MQ=255)                                                               tGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAActct                                                                                <  1:927841/143‑1 (MQ=255)                                                                  gTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTATCGAACTCTTCg                                                                             >  1:240039/1‑143 (MQ=255)                                                                     atgatAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAGAAAACCGGAGTCTGTGCTCCGGTACGGTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGccc                                                                          >  1:1006449/1‑143 (MQ=255)                                                                      tgatAAGCAGTTAACGCTGCAGGTCACCATTCAGGAAGATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCa                                                                         <  1:195082/143‑1 (MQ=255)                                                                      gcatAGGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAGGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCa                                                                         <  2:144846/141‑1 (MQ=255)                                                                            gCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGa                                                                   >  1:190713/1‑143 (MQ=255)                                                                             cAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGat                                                                  <  1:92577/143‑1 (MQ=255)                                                                               gTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGctat                                                                >  2:616311/1‑143 (MQ=255)                                                                                 tAACGCTGCAGGTCACCAGTCCGGACTATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATAtct                                                              <  1:822641/143‑1 (MQ=255)                                                                                   agtcTGCAGGGCGCCATTCAGGAATATCCGGCAACCAATTAAGTCGGGCGCTCAAACCAAACAACCGGAGTCTGTTCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATAtcttt                                                            <  2:532853/140‑1 (MQ=255)                                                                                    cGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATAtctttc                                                           <  2:358632/143‑1 (MQ=255)                                                                                     gCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATAtctttct                                                          >  1:927018/1‑143 (MQ=255)                                                                                      cTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAGTTACTCAGCACCGAACTCTTCGCCCAGGGCGCAAtctactct                                                         >  2:1027607/1‑138 (MQ=255)                                                                                            gTCACCATTCAGGAATATCCGGCAACCAATTAAGTCATGCGCTCAAAACAAAAAACCGGAGTCTGTGCTACGGACTTTTATTATCCGCTGCTCAACCCCACATCAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGt                                                   >  1:829514/1‑143 (MQ=255)                                                                                                  cttCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTTATCAGCGTATCCAg                                             >  2:709749/2‑143 (MQ=255)                                                                                                       ngAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCCGTGCTCCGGTTTTTTATTATCCGCTAATCAAGCACCTATTCACGAACTCTTCGCCCAGGCCGACCGCTTTCTTCAGCGTGTCGCGCAtcc                                        >  1:380783/2‑141 (MQ=255)                                                                                                               cGGCAGCCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAgc                                <  2:1006315/143‑1 (MQ=255)                                                                                                                cgttaataagtaattgattagcggataatAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTACCGAACTCTTCGCCCCGGGCGATATCTTTCTTCTACGTATCCACCATCCCTCCCAgcg                               <  2:287317‑M1/114‑1 (MQ=255)                                                                                                                   aaCCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGACTGTGCACCGGGCTTTTATTATCCGCTAATCAATTACTAATTAACGAACTCTTCCCCCAGGGCGACATCTCTCTCCAACGTATCCAGCATCCCTTcccactcgc                            >  2:643278/1‑136 (MQ=255)                                                                                                                     ccAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTc                          <  1:281602/143‑1 (MQ=255)                                                                                                                      cAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCACCGCGTTCt                         >  1:352235/1‑143 (MQ=255)                                                                                                                                  gcgcTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATgcgc             >  2:618539/1‑143 (MQ=255)                                                                                                                                     cTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCATCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCa          <  1:322642/143‑1 (MQ=255)                                                                                                                                      tCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGCACTCTTCGCCCAGGGCGCTATCTTTCTTCAGCGTATCCAACACACCTTCCAGAGCAATATGTTTAAATACGcacaa         >  1:199415/1‑142 (MQ=255)                                                                                                                                        aaaacaaaaAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTCACGAACTCCTCGCCCAGGGCCATATCTTTCTTCAGCGTATCCACCCTACCTTCCAGCGCGTTCTGTTCACATGCGCTCAggc       >  2:423925/1‑142 (MQ=255)                                                                                                                                         aaacaaaaAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTAAGCGTCTCCAGCACACCTTCCAGCGCGTTCTGTTCAAATGCGCTCCgggc      >  2:220277/1‑142 (MQ=255)                                                                                                                                             AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTCACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTCCCg  <  2:340427‑M1/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                               TCTGGAGACGATGGATCAGGTGGCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCG  >  NC_000913/3383144‑3383426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.