New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3383284 =	40 (0.730)	3 (0.060)	3/240	NT	7.7%	intergenic (+17/+46)	degS/mdh	serine endoprotease/malate dehydrogenase
	?	NC_000913	3383314 =	36 (0.720)					intergenic (+47/+16)	degS/mdh	serine endoprotease/malate dehydrogenase

TCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCG  >  NC_000913/3383174‑3383450                                                                                                                                             |                                                                                                                                         tCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTttatt                                                                                                                                        >  1:780571/1‑143 (MQ=255)     ccTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATcc                                                                                                                                    >  2:927841/1‑143 (MQ=255)      cgggTGCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCAGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCg                                                                                                                                   >  1:781872/3‑143 (MQ=255)              gTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTCCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCaa                                                                                                                           <  1:366332/143‑1 (MQ=255)              gTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGCCGTGCGCTAAAAACAAAAAACCGGCGCCTGTGCTCCGGTCTTTTAGTATCCACTAATCaa                                                                                                                           >  2:510125/1‑143 (MQ=255)                    cagaacgcgctggaaggtatgctggatacgctgaagaaagatatcgccctgggcgaagagttcgttaataagtaattgattagcggataatAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACtt                                                                                                                     <  2:732794‑M1/52‑1 (MQ=255)                      tGTCGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGGCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTGAAAACCAAACACCGGCGTCTGTGCTCCGGCTTTTTATTATCCGCTACTCCATTACttat                                                                                                                   >  2:959214/1‑143 (MQ=255)                      gaacgcgctggaaggtatgctggatacgctgaagaaagatatcgccctgggcgaagagttcgttaataagtaattgattagcggataatAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACttat                                                                                                                   >  1:732794‑M1/90‑143 (MQ=255)                        tagtagTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTACTCAATTACttattt                                                                                                                 >  1:233166/1‑142 (MQ=255)                          gttgtGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATACGGCAACCAATTAAGTCGTGCGCTCAAAACAAAATACCGGAGTTTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAAc                                                                                                               <  2:37973/140‑1 (MQ=255)                          gtagtGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAAc                                                                                                               >  1:302280/1‑143 (MQ=255)                           cgctgggagggatggtggatacgtagaagaaagatatcgcccggggcgaagagttcggtaataagtaattgattagcggataataaaaaaccggagcacagactccggttttttATTATCCGCTAATCAATTACTTATTAACg                                                                                                              <  2:287317‑M2/29‑1 (MQ=255)                             gtGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGGATATCCGGCAACCAATTAAGGCGTGCGCTCAAAACAAAAAACCGGAGACTGTGGTCCGGCTTTGTATTATCCGCTAATCAATTACTTATTAACGaa                                                                                                            >  2:887180/1‑143 (MQ=255)                                 tGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAActct                                                                                                        <  1:927841/143‑1 (MQ=255)                                 tGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAActct                                                                                                        <  2:740132/143‑1 (MQ=255)                                    gTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTATCGAACTCTTCg                                                                                                     >  1:240039/1‑143 (MQ=255)                                       atgatAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAGAAAACCGGAGTCTGTGCTCCGGTACGGTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGccc                                                                                                  >  1:1006449/1‑143 (MQ=255)                                        tgatAAGCAGTTAACGCTGCAGGTCACCATTCAGGAAGATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCa                                                                                                 <  1:195082/143‑1 (MQ=255)                                        gcatAGGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAGGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCa                                                                                                 <  2:144846/141‑1 (MQ=255)                                              gCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGa                                                                                           >  1:190713/1‑143 (MQ=255)                                               cAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGat                                                                                          <  1:92577/143‑1 (MQ=255)                                                 gTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGctat                                                                                        >  2:616311/1‑143 (MQ=255)                                                   tAACGCTGCAGGTCACCAGTCCGGACTATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATAtct                                                                                      <  1:822641/143‑1 (MQ=255)                                                     agtcTGCAGGGCGCCATTCAGGAATATCCGGCAACCAATTAAGTCGGGCGCTCAAACCAAACAACCGGAGTCTGTTCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATAtcttt                                                                                    <  2:532853/140‑1 (MQ=255)                                                      cGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATAtctttc                                                                                   <  2:358632/143‑1 (MQ=255)                                                       gCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATAtctttct                                                                                  >  1:927018/1‑143 (MQ=255)                                                        cTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAGTTACTCAGCACCGAACTCTTCGCCCAGGGCGCAAtctactct                                                                                 >  2:1027607/1‑138 (MQ=255)                                                              gTCACCATTCAGGAATATCCGGCAACCAATTAAGTCATGCGCTCAAAACAAAAAACCGGAGTCTGTGCTACGGACTTTTATTATCCGCTGCTCAACCCCACATCAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGt                                                                           >  1:829514/1‑143 (MQ=255)                                                                    cttCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTTATCAGCGTATCCAg                                                                     >  2:709749/2‑143 (MQ=255)                                                                         ngAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCCGTGCTCCGGTTTTTTATTATCCGCTAATCAAGCACCTATTCACGAACTCTTCGCCCAGGCCGACCGCTTTCTTCAGCGTGTCGCGCAtcc                                                                >  1:380783/2‑141 (MQ=255)                                                                                 cGGCAGCCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAgc                                                        <  2:1006315/143‑1 (MQ=255)                                                                                  cgttaataagtaattgattagcggataatAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTACCGAACTCTTCGCCCCGGGCGATATCTTTCTTCTACGTATCCACCATCCCTCCCAgcg                                                       <  2:287317‑M1/114‑1 (MQ=255)                                                                                     aaCCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGACTGTGCACCGGGCTTTTATTATCCGCTAATCAATTACTAATTAACGAACTCTTCCCCCAGGGCGACATCTCTCTCCAACGTATCCAGCATCCCTTcccactcgc                                                    >  2:643278/1‑136 (MQ=255)                                                                                       ccAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTc                                                  <  1:281602/143‑1 (MQ=255)                                                                                       ataagtaattgattagcggataataaaaaaccggagcacagactccggttttttATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTc                                                  >  1:732794‑M2/55‑143 (MQ=255)                                                                                        cAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCACCGCGTTCt                                                 >  1:352235/1‑143 (MQ=255)                                                                                         aagtaattgattagcggataataaaaaaccggagcacagactccggttttttATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTg                                                <  2:732794‑M2/91‑1 (MQ=255)                                                                                                    gcgcTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATgcgc                                     >  2:618539/1‑143 (MQ=255)                                                                                                       cTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCATCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCa                                  <  1:322642/143‑1 (MQ=255)                                                                                                        tCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGCACTCTTCGCCCAGGGCGCTATCTTTCTTCAGCGTATCCAACACACCTTCCAGAGCAATATGTTTAAATACGcacaa                                 >  1:199415/1‑142 (MQ=255)                                                                                                          aaaacaaaaAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTCACGAACTCCTCGCCCAGGGCCATATCTTTCTTCAGCGTATCCACCCTACCTTCCAGCGCGTTCTGTTCACATGCGCTCAggc                               >  2:423925/1‑142 (MQ=255)                                                                                                           aaacaaaaAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTAAGCGTCTCCAGCACACCTTCCAGCGCGTTCTGTTCAAATGCGCTCCgggc                              >  2:220277/1‑142 (MQ=255)                                                                                                               AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTCACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTCCCg                          <  2:340427‑M1/143‑1 (MQ=255)                                                                                                                 AAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGAt                        >  1:154332‑M1/1‑143 (MQ=255)                                                                                                                   AACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAg                      <  1:671730‑M1/143‑1 (MQ=255)                                                                                                                      cGGAGTCTGTGCTCCGGTTTTTTATTCTCCGCTAATCAATTACTTATTAACGACCTCTTCGCCCCGGGCGATATCTTTCTTCAGCGTATCCAGCCTACCTTCCAGCGCGTTCTGTTCAAATGACCTCAGGGTCCCgctgcgtc                   >  2:87422/1‑136 (MQ=255)                                                                                                                       GGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGAttt                  <  1:272967‑M1/143‑1 (MQ=255)                                                                                                                         AGTCTGTGCTCCGGTGTTTTATTATCCGTTAATCAATTACTTAGTAGCGGACCGTTCGCCCAGGGCGATATCTTTCGTCATCGTAGCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCTCTCAGGGTACCGATAGATTtat                >  2:819674‑M1/1‑142 (MQ=255)                                                                                                                             tgtgCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGctc            <  1:367097/143‑1 (MQ=255)                                                                                                                                 ctccggttttttATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCAATAGATTTACGCTCTTcc        >  1:973190‑M2/13‑143 (MQ=255)                                                                                                                                       ttttttATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCg  <  1:428591‑M2/137‑1 (MQ=255)                                                                                                                                             |                                                                                                                                         TCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCG  >  NC_000913/3383174‑3383450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.