New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 932414	40 (0.730)	4 (0.080)	4/250	NT	9.3%	intergenic (‑364/‑181)	trxB/lrp	thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp
	?	NC_000913	= 932420	40 (0.770)					intergenic (‑370/‑175)	trxB/lrp	thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp

CGATGTTTTGCTTTGACAATCCCCTGGTGTTTTGCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACA  >  NC_000913/932281‑932561                                                                                                                                              |                                                                                                                                               cGATGTTTTGCTTTGACAATCCCCTGGTGTTTTGCGAAAACATTTGAGGTAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGCGGACAGacg                                                                                                                                             <  2:804923‑M2/143‑4 (MQ=255) cGATGTTTTGCTTTGACAATCCCCTAGTTGTTTGCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGacg                                                                                                                                             >  1:130414‑M2/1‑140 (MQ=255)  gATGTGTTGCTTTGACAACCCCCTGGTGCTTTGCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGacgc                                                                                                                                            >  2:30025‑M2/1‑139 (MQ=255)      ttttGCTTTGACAATCCCCTGGTGTTTTGCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCCTGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGCCGCCAtt                                                                                                                                        >  1:103781/1‑143 (MQ=255)       tttGCTTTGACAATCCCCTGGTGTTTTGCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAACTACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTc                                                                                                                                       >  1:641402/1‑143 (MQ=255)        ttGCTTTGACAAGCCCCTGGTGTTTTGCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCg                                                                                                                                      <  2:39842/143‑1 (MQ=255)          gCTTTGACAAGCCCCTGGTGTTTTGCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTg                                                                                                                                    <  1:116477/143‑1 (MQ=255)           cTTTGACAATCCCCTGGTGTTTTGCGAATATTTTGGTTGAAT‑TAAAAAAACATTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGa                                                                                                                                   <  1:194498/143‑1 (MQ=255)            tttGGCAATCGCCGGGTGTTTGGCGAAAAGAGTCGCGGCAG‑CAAAAAAAACGTGTTCTTATGTGTGAATAACAATGCATGTAAATACCATGTTTGCCG‑TGCTAGTGATATGTCTTTATGGCGTGGACAGACGCCATTCGTGAt                                                                                                                                  <  2:270792/143‑1 (MQ=255)            tttGACAATCCCCTGGTGTTTTGCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTGCAGCACCTTGT‑AGAACTCCGTATGGCGTTGACGGACGCCATTCgcgct                                                                                                                                  >  1:769432/1‑139 (MQ=255)              tGACAATCCCCTGGTGTTTTGCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGAATGGCGTGGACAGACGCCGTTCGTGacgc                                                                                                                                >  1:134834/1‑140 (MQ=255)                        cTGGTGTCTTGCGAAAACATACGAGGAAG‑AAAAAAAACAGTATTCCTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGc                                                                                                                     <  1:736136/143‑1 (MQ=255)                              ttttGCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAg                                                                                                               <  1:15281/143‑1 (MQ=255)                                  gCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCCTGTTTACCG‑TGCTAGTGAAATCTCCGTATCGCGTGGACAGACGCCACTCGTGAT‑GTCGCTAGCCGCCACAAGGCag                                                                                                           >  2:684131/1‑142 (MQ=255)                                     aaaaCATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGGT‑GTCGCTAGCTGCCACCAGGCAACgg                                                                                                        >  1:85864/1‑143 (MQ=255)                                      caaCACTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGt                                                                                                       <  1:630619/142‑1 (MQ=255)                                         cATTCGAGGAAG‑AAACAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TTCTAGTGAAATCTACGTATGGCGGGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGtctt                                                                                                    <  1:926870/143‑1 (MQ=255)                                          aTTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACCAGGCACCGGtgctg                                                                                                   >  1:94689/1‑139 (MQ=255)                                           ttCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGtcttct                                                                                                  <  1:754886/143‑1 (MQ=255)                                           ttCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCAGGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGtcttct                                                                                                  <  1:1003670/143‑1 (MQ=255)                                              gAGGAAGAAAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCCTTCGTGAT‑GTCGATAGATGCCACACGGCGGCGGTGTTCTCa                                                                                                >  1:996116/1‑143 (MQ=255)                                              gAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCGTCTCAc                                                                                               >  1:401801/1‑143 (MQ=255)                                                ggAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCg                                                                                             <  2:595300/143‑1 (MQ=255)                                                  aag‑aaAAACATCAGTATTTTTATATGGGCTGACTCATGCATGTAAATGCGATGTTTACCG‑TGCTCGTGAACTCTACGTATGGCGTGGACAGACGCCACTCGTGAT‑GTCTATAGCTGCCACAAGGCAACGGTCTTCTCACCGTa                                                                                           <  2:642578/143‑1 (MQ=255)                                                        aaaaaaCAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTCCCCACCGTAGAcgc                                                                                      >  2:647508/1‑141 (MQ=255)                                                         caaagCAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCa                                                                                     <  1:29584/142‑1 (MQ=255)                                                         aaaaaCAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCa                                                                                     >  2:41146/1‑143 (MQ=255)                                                               aGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACACGGCAACGGTCTTCTCACCGTAGACCCAGGCAtt                                                                               >  1:465598/1‑143 (MQ=255)                                                                     cTTATATGCGCATAACCATGCATGTAAATACCATGTTTACAG‑TGCTAGCGAAATCTACGTATGGCGAGGACAGACGCCATTCGTGGT‑GTCGAAAGCAGGCACAAGGCAACGGTCTACACACCGTAGACCCAGGCAAAgcgcgc                                                                         >  2:285770/1‑143 (MQ=255)                                                                            gcgcATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCGACAAGGCAACGGTCTTCTCACCGTAGACCCAGGAATTGTGCGCCGTGact                                                                  >  1:669988/1‑141 (MQ=255)                                                                                     catgcatgTAAATACCATGTTTACCG‑TGCTAGTGACATCTACGTATGGCGTGGACAGTCGCCCTTCGTGAT‑GTCGATCGCTGCCCCAAGGGCACGGTCTTCCCACCGTAGACCCCGCCAATGCGCGCCGTCACTCTTCacaat                                                         >  2:420773/1‑139 (MQ=255)                                                                                        gcatgTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCCACGGTCTTCTCACCGTAGACCGAGGCATTGCGCGCCGTGAATGTTCCTGATTTc                                                      >  1:63267/1‑143 (MQ=255)                                                                                              aaaTACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCCGGATTAGCGCGAGGTGACTCTTCATGATTTAgggcgg                                                >  2:616431/1‑139 (MQ=255)                                                                                                 tatcATGTTTACCA‑TGCTAGTGAGTGCAACGGAGGGCGTGGACAGACGCCACTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCg                                             <  1:33608/140‑1 (MQ=255)                                                                                                 tACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACGCAGGCATTGCGCGCCGTGAGTCTTCGTGATGGCGGGCTATCg                                             >  1:786414/1‑143 (MQ=255)                                                                                                    cATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGacgccatacgtagatttcactagctcggtaaagatggtatttacatgcatggttatgcgcatataaaaataatgtgttttttcttcctacaatggtttaca                                           <  2:354092‑M2/143‑102 (MQ=255)                                                                                                           aCCG‑TGCTAGTGGAATCTACGTATGGCGTGGA‑AAAATATTTTCTGGTTGGTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAg                                   <  2:219536/143‑1 (MQ=255)                                                                                                              g‑TGCTAGTGGAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGa                                <  2:755801/143‑1 (MQ=255)                                                                                                              g‑TGCTAGTGAACTCTGCGTATGGCGTGGACAGACGCCATTCGTGAT‑GTGGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGa                                <  2:744375/143‑1 (MQ=255)                                                                                                              g‑TGATAGTGAAATCTACCTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGa                                <  1:6698/143‑1 (MQ=255)                                                                                                                tGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGGCTTCTCACCGTAGACCCAGGCATTGCGCGCCGGGAAACTTCATGACTAAGGGCAATAGCGACGGGtggggga                               >  2:252965/1‑137 (MQ=255)                                                                                                                 gCTAGTGAAATCTACGTATGGCGTGGACAGacgccatacgtagatttcactagcacggtaaacatggtatttacatgcatggttatccgcatataagaatactggtttttttcttcctcggatgctttcgcacaacaccatgc                               <  2:68685‑M2/143‑114 (MQ=255)                                                                                                                   tAGTGAAATCTACGTATGGCGTGGACAGACCCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGActct                            <  2:336582/143‑1 (MQ=255)                                                                                                                             tACGTATGGCGTGGACAGacgccatacgtagatttcactagcacggtaaacatggtatttacatgcatggttatgcgcatataagaatactgttttttttcttcctcgaatgttttcgcaaaacaccaggggattgtcaaagc                   <  1:1024569‑M2/143‑126 (MQ=255)                                                                                                                                gTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTCGACCCAGGCATTGCGCGCCGTGCCTCCTCATGCTTTCCGTCTATCGTGACCGGCAGCGACTCTGAACAGTGATGtt               >  1:90696/1‑143 (MQ=255)                                                                                                                                 tATGGCGTGGACAGacgccatacgtagatttcactagcacggtaaacatggtatttacatgcatggttatgcgcatataagaatactgttttttttcttcctcgaatgttttcgcaaaacaccaggggattgtccaagcaaaa               <  1:55994‑M2/143‑130 (MQ=255)                                                                                                                                  aTGGCGTGGCCAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTGACCGTAGACCCAGGCATCGCGCGCCGGGAATCTTCATGATTGCGGACTATCGTGACGGGTAGCGGCTCTGAACAgtggtgcgtc             >  2:891411/1‑139 (MQ=255)                                                                                                                                    ggCGCGGACAGACGCCAGTCGTGAT‑GTCGAGAGCGGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTTAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAg           <  1:317016/143‑1 (MQ=255)                                                                                                                                     gCGTGGACAGCCGCCATTCGTGAT‑GGTGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAgg          <  2:884381/143‑1 (MQ=255)                                                                                                                                     gCGGGGACATACGCCACTCGGGAT‑GTCGATAGGTGCCACAAGGCAACGGTCTGCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAgg          <  2:627071/143‑1 (MQ=255)                                                                                                                                       gTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACCGTGCTGTTTCAGGGt        >  1:980823/1‑143 (MQ=255)                                                                                                                                       gTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGCTGTTTCAGGGt        >  1:60223/1‑143 (MQ=255)                                                                                                                                             aGACGCCATGTGTCAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACa  <  1:623015/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                               CGATGTTTTGCTTTGACAATCCCCTGGTGTTTTGCGAAAACATTCGAGGAAG‑AAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCG‑TGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGAT‑GTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACA  >  NC_000913/932281‑932561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.