BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3947039 =	84 (1.530)	6 (0.120)	5/246	NT	6.8%	intergenic (+7/+89)	trpT/hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
*	?	NC_000913	3947061 =	86 (1.680)	6 (0.120)	5/246	NT	6.8%	intergenic (+29/+67)	trpT/hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR

Only 100 of 111 total aligned reads displayed.

GGTTCGAGTCCCGTCCGTTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGCATTTTTATCGCTATTTTGCAGCCAT  >  NC_000913/3946924‑3947203

ggctCGAGGCTCGTCCTTTCCGCCGCCCTCATTAGGGGCCTAGTTTGTCTGTTAGATCCCCTGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑ttttttt                                                                                                                                           <  2:1034447/140‑1 (MQ=255)

ggTTGGAGTCCGGTGGGTTCGGCCACCCTAAGTAGGGGCGGAGTTCAGTTGGTAGAGCGCCGGTCGCCGGTTGCTGGTGTTGGGGCATCGTGTCTCTCCGCCTCTGCGAGAACTCATCCTTAGCGAAAGCTAAGGA‑ttttttt                                                                                                                                           <  2:1036257/143‑1 (MQ=255)

 gTTCGAGTCCCGTCCGTTCCGCCACCCTAATTAGTGGCGCAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGAGTTGGGAGTTCGAGTCTCTCCGCCCCAGCCAGAAAGCATGCTTAGCGAAAGCAAAGGA‑tattgttt                                                                                                                                          >  1:420942/1‑143 (MQ=255)

   tCGAGGCCCGTCCGTTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTAt                                                                                                                                        <  1:570018/143‑1 (MQ=255)

    tgcgcgatcttgtgaagattagggtggtggatgaagtgtattaatatgaagggctggcaagtatgccggtagaaggatttacttcggagagggttatttcagataaaaaaaATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATc                                                                                                                                       >  2:720730‑M1/112‑143 (MQ=255)

      aGTCCCGTCCGTTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTg                                                                                                                                     >  1:843505/1‑143 (MQ=255)

        tCCCGTCCGTTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGaa                                                                                                                                   >  2:755805/1‑143 (MQ=255)

        tCCCGTCCGTTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGaa                                                                                                                                   >  2:639710/1‑143 (MQ=255)

          ccgtccgtTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAAt                                                                                                                                 >  1:2126/1‑143 (MQ=255)

           cgtccgtTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATa                                                                                                                                >  2:169999/1‑143 (MQ=255)

            gtccgtTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAACACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTACCTGAAATaa                                                                                                                               >  1:927395/1‑143 (MQ=255)

                 ttCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAAGCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTGTCTGAAATAACCctc                                                                                                                          >  1:671398/1‑143 (MQ=255)

                   aaattaacgtgctggatgaagtgtattaatatgaatggctggcaaggatgccggtagaaggatttacttcggagagggttatttcagataaaaaaaATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCtctc                                                                                                                        >  1:652844‑M1/97‑143 (MQ=255)

                   aaattaacgtgctggatgaagtgtattaatatgaatggctggcaaggatgccggtagaaggatttacttcggagagggttatttcagataaaaaaaATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCtctc                                                                                                                        >  1:652755‑M1/97‑143 (MQ=255)

                    cGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTTTCTCCGCCCCGGCCAGAAATCATCCTTGGCGAAAGCTAAGGT‑TTTTTTTTGTCTGAGATAAcccggtcc                                                                                                                       >  1:17320/1‑138 (MQ=255)

                    cGCCACCCTAATTAGGGGCGAAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTAAAATAACCctgtaa                                                                                                                       >  2:370324/1‑139 (MQ=255)

                     gCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCg                                                                                                                      >  1:937533/1‑143 (MQ=255)

                      ccACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCCGAAATCATCCTTAGCGACAGCTAAGGA‑TTTTTTTTATCAGGAAGAACCCTCTCCGa                                                                                                                     >  1:996925/1‑143 (MQ=255)

                       taatgggcgggaggaagtgtattattatgaatggctggcaaggatgccggtagaaggatttacttcggagagggttttttcatataaaaaaaATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGaa                                                                                                                    >  2:297819‑M1/93‑143 (MQ=255)

                        aCCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGATTTTTTTTTATCTGAAATAACCCTCTACGaa                                                                                                                    <  1:151859/143‑1 (MQ=255)

                        aCCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAg                                                                                                                   >  2:818570/1‑143 (MQ=255)

                         cccTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGt                                                                                                                  >  2:658751/1‑143 (MQ=255)

                         cccTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGt                                                                                                                  <  1:100925/143‑1 (MQ=255)

                           cTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTaa                                                                                                                <  1:858986/143‑1 (MQ=255)

                                tAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCAGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCt                                                                                                           >  1:148627/1‑143 (MQ=255)

                                    ggCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTa                                                                                                       >  1:586578/1‑143 (MQ=255)

                                     gCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCATTCTAc                                                                                                      >  1:518851/1‑143 (MQ=255)

                                      cGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCGGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑GTTTTTTTATCTGAAATAACGCTCTCCGAAGTAGATCCTTCTAcc                                                                                                     >  1:152006/1‑143 (MQ=255)

                                       gTAGTTCGCTTGGTAGGGCGCCGGTCTCCGATACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCg                                                                                                    <  2:331918/143‑1 (MQ=255)

                                       gTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCg                                                                                                    >  2:640030/1‑143 (MQ=255)

                                        tAGTGCGATTGGTCGAGCACCGGTCCCCAAACCCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCAGCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCgg                                                                                                   <  1:873371/143‑1 (MQ=255)

                                           ttCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCACTGCCAGAGATCATCCTTAGCGCGAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCGTTCTACCGGCAt                                                                                                >  1:648669/1‑143 (MQ=255)

                                              aaTTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCt                                                                                             >  1:476867/1‑143 (MQ=255)

                                              aaTTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCt                                                                                             >  1:1014669/1‑143 (MQ=255)

                                               aTTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTCTTATCTCATATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCtt                                                                                            <  1:294458/143‑1 (MQ=255)

                                                   gtcgagCGCCGGTCCCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTCGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTgcca                                                                                        <  2:773915/140‑1 (MQ=255)

                                                   gTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTgcca                                                                                        <  2:691870/143‑1 (MQ=255)

                                                      gagCACCGGTCTCCAAAACCGGGTGTTGGGAGTCCGAGTCTCTCCGCCCCCGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTgccagcc                                                                                     <  1:277781/143‑1 (MQ=255)

                                                        gCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGGAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCAt                                                                                   >  2:275969/1‑143 (MQ=255)

                                                            cGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGACGGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTcgt                                                                               >  1:96611/1‑141 (MQ=255)

                                                            cGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGCAGTAAATCCTTCTACCGGCATCCTTGCCAGCCGTTCat                                                                               >  1:763719/1‑143 (MQ=255)

                                                            cGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGCCTCTCGGCCCCGGCGAGGAATCATCCTTAGCGCAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCAGTcct                                                                               >  1:202882/1‑141 (MQ=255)

                                                             ggTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCata                                                                              <  1:977226/143‑1 (MQ=255)

                                                              gTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCatat                                                                             >  1:486157/1‑143 (MQ=255)

                                                              atctcCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCatat                                                                             <  1:958826/142‑1 (MQ=255)

                                                               tctcCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATAtt                                                                            <  1:737026/143‑1 (MQ=255)

                                                               tctcCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTCAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATAtt                                                                            <  1:955856/143‑1 (MQ=255)

                                                                cgccAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTa                                                                           <  2:89808/141‑1 (MQ=255)

                                                                 tcCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑GTTTTTTTATCTGAAATAACACAATCCGACTTATGTCCTTATACACGCGTCCTTGCCAGCCATTCAGATTaa                                                                          >  1:392955/1‑143 (MQ=255)

                                                                   cagagccGGGTGCTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATATCCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATa                                                                        <  2:783670/138‑1 (MQ=255)

                                                                   cAAAATCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCGCTCCGAAGTAAATCCTTCTACCGGCATCGTTGCCAGCCATTCATATTAATa                                                                        >  2:525840/1‑143 (MQ=255)

                                                                   cAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCCTCCTTGCCACCCATTTatcctacta                                                                        >  2:646692/1‑136 (MQ=255)

                                                                   cAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATa                                                                        >  2:274046/1‑143 (MQ=255)

                                                                     aaaCCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATaca                                                                      <  1:169999/143‑1 (MQ=255)

                                                                          gggTGTTGGGAGTTCGCGTCTCTCCGCCCCTGCCAGAACTCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCa                                                                 <  2:21662/143‑1 (MQ=255)

                                                                            gtgtTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATc                                                               >  1:389870/1‑143 (MQ=255)

                                                                             tgtgGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGACATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATcc                                                              <  1:815249/143‑1 (MQ=255)

                                                                             tgtTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATcc                                                              >  1:411366/1‑143 (MQ=255)

                                                                               ttGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCGAGCCATGGATAGTAATACACTTCATCCAg                                                            >  1:186849/1‑143 (MQ=255)

                                                                                 cggAGTTCGAGTCTATCCGACACTGCCAGAAATCATCCTTCGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCa                                                          <  2:772234/142‑1 (MQ=255)

                                                                                  ggAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAACTAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGccc                                                         >  1:293004/1‑141 (MQ=255)

                                                                                      ttCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGACAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCAGTCATATTAATACACTTCCTCCAGAACGTTa                                                     >  2:738204/1‑143 (MQ=255)

                                                                                      ttCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACAATTCATCCAGCACGTTa                                                     >  2:352846/1‑143 (MQ=255)

                                                                                       ttcggagagggttatttcagataaaaaaaatccttagctttcgctaaggatTTTTTTTATATGAAAAAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATAATAATACACTTCCTCCCGCCCATTa                                                     >  2:297819‑M2/52‑143 (MQ=255)

                                                                                        cGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGCGGTAAATCCTTCTACCGGCATCCTTGACAGCCCTTCATATTAATCCACTTCATCACGCACGTTAAt                                                   >  2:192345/1‑143 (MQ=255)

                                                                                          aGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGC‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATCCATATTAATACCCTTCATCCAGCACGTTAAttt                                                 >  2:185914/1‑143 (MQ=255)

                                                                                           gagagggttatttcagataaaaaaaatccttagctttcgctaaggatTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAAttt                                                 >  1:652844‑M2/48‑143 (MQ=255)

                                                                                           gagagggttatttcagataaaaaaaatccttagctttcgctaaggatTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAAttt                                                 >  1:652755‑M2/48‑143 (MQ=255)

                                                                                             ctctcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCa                                              <  1:639710/143‑1 (MQ=255)

                                                                                              tctcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTACGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCCTTCATATTAATCCACTTCATCCAGCCCCTTAATTTTCaa                                             >  2:400973/1‑143 (MQ=255)

                                                                                              tctcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGACATAACCCTCTCCGAAGGAAATTCTTCTACCGGCATCCTTGCCACCCGTTCATATTAATCTCCTTCATCCCGCACGTTCTTTTTCac                                             >  2:440808/1‑142 (MQ=255)

                                                                                                tcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCaaaa                                           >  1:981483/1‑143 (MQ=255)

                                                                                                agcgcgCCTGCAAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCaaaa                                           <  1:81863/141‑1 (MQ=255)

                                                                                                   gCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGAt                                        >  1:791879/1‑143 (MQ=255)

                                                                                                      ccTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATcgc                                     >  1:158128/1‑143 (MQ=255)

                                                                                                      ccTGCCAGAAATCATCCGTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATcgc                                     <  1:406553/143‑1 (MQ=255)

                                                                                                        tGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGa                                   <  1:810754/143‑1 (MQ=255)

                                                                                                          gataaaaaaaatccttagctttcgctaaggatTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATACTTGCCAGCCCTTCATATTAATACACTTCATCCACCACCCTAATCTTCACAAGatcgcgca                                  >  2:720730‑M2/33‑141 (MQ=255)

                                                                                                            aGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGTCAGCCATTTATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATcg                               >  1:93860/1‑142 (MQ=255)

                                                                                                            aGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATcc                               >  2:236340/1‑142 (MQ=255)

                                                                                                              aaaTCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATATGAGACAACCCTCTCCGCAGCAAACTATTCTACCTGCCTCCTTGCCAGCCACTCCTCTTAATACACTTCATCCGTCCCGTTCCTCTTCATCATATCGCGaccatcc                             >  2:702635/1‑137 (MQ=255)

                                                                                                              aaaTCATCCTTAGCGAAAGCAAAGGA‑ATTTATTAATCTGAAATAACCCTCACCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAAc                             <  1:364427/143‑1 (MQ=255)

                                                                                                               catcagcCTTATCGGAAGCTAAGGA‑TTTTTTTTATCTGACATACCGCGCTCCGAAGTAAATCCCTCTACCGGCATCCTTGTCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACg                            <  2:453922/142‑1 (MQ=255)

                                                                                                                atcatcCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGc                           >  1:785756/1‑143 (MQ=255)

                                                                                                                 tcatcCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGCa                          <  1:47603/143‑1 (MQ=255)

                                                                                                                   ATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTTTTTTTTTTAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGCAtt                        <  2:4543‑M1/143‑1 (MQ=255)

                                                                                                                     tccttagctttcgctaaggatTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCACCCATCACGTTAATCTTCAAACGATAGCGAATCAACGcatct                       >  2:241813‑M2/22‑141 (MQ=255)

                                                                                                                     ccctAGCTAAAGTTAAGGA‑TTTTTTTTATCTGAAATACCCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGCAtttt                      <  2:518851/140‑1 (MQ=255)

                                                                                                                     CCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTACGAATGAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGCAtttt                      <  1:1010973‑M1/143‑1 (MQ=255)

                                                                                                                      CTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCGAGGTTGCGAACCATCAACAGATCGCGAATCAACGCAttttt                     <  2:465210‑M1/143‑1 (MQ=255)

                                                                                                                       cttagctttcgctaaggatTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGTCATCTTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCACGAATCAACGCAttttt                     >  2:980565‑M2/20‑143 (MQ=255)

                                                                                                                        TAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGCATTTTTAt                   >  2:148627‑M1/1‑143 (MQ=255)

                                                                                                                           CGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGCATTTTTATCGc                <  1:560102‑M1/143‑1 (MQ=255)

                                                                                                                                    aaggatTTTTGTTATCTGAAATAACCCGCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAACGCTCGCGAATCAACGCATTTTTATCGCTATTTTGc        <  2:645210‑M2/137‑1 (MQ=255)

                                                                                                                                    aaggatCTTTTTTATCTGAAATAACCCTCTCCGAAGTACATCCTTCTACCGGCATCCGTGCCAGCCATTCATATTAATACACTTGATCCAGCACTTTAATTTTCAAAAGATCGCGAATCAACGCATTTTTATCGCTATTTTGc        <  2:525533‑M2/137‑1 (MQ=255)

                                                                                                                                     ggA‑TTTTTTTTATTTGTAATAACCCTCTCCGAAGTAAATCCTTCTTCTTGCTTCTTTGCCATCCATTCATATTAATACATTTCATCCAGCACGTTATTTTTCAAAAGATCGCGACTCTACGCATTTTTCTCTCTATCTTTCAg      >  2:745111/1‑143 (MQ=255)

                                                                                                                                     aggatTTTTTTTATCTGAAATAACCCTCTCCGAAGGAAATCCTTCTAGCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGCATTTTTATCGCTATTTTGCa       <  1:964350‑M2/138‑1 (MQ=255)

                                                                                                                                        atTGTTGTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTGCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGCATTTTTATCGCTATTTTGCAGcc    <  1:1047011‑M2/141‑1 (MQ=255)

                                                                                                                                         tTTTTTTTATCTGAAATAACCCTCTCCGAGGTAAATCCTTCTACGGGCATCCTTGCCAGCAATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGCATTTTTATCGCTATTTTGCagcga   >  1:925663‑M2/2‑141 (MQ=255)

                                                                                                                                          tttttttATCCGAAATAACCCCCTCCGAAGCAAAACCATCTCCCGGCATCCTTGCCAGCCATTCATATTAATACACGTCATCCAGCACGTTAATTTTGAAAAGATCGCGAATCAACGCATTTTTATCGCTATTTTGCAGCCat  <  1:90631/143‑1 (MQ=255)

GGTTCGAGTCCCGTCCGTTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGA‑TTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTCATATTAATACACTTCATCCAGCACGTTAATTTTCAAAAGATCGCGAATCAACGCATTTTTATCGCTATTTTGCAGCCAT  >  NC_000913/3946924‑3947203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.