New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4012917 =	30 (1.450)	4 (0.200)	4/256	NT	12.3%	intergenic (‑101/‑136)	metR/metE	DNA‑binding transcriptional dual regulator MetR/cobalamin‑independent homocysteine transmethylase
	?	NC_000913	4013018 =	28 (1.400)					intergenic (‑202/‑35)	metR/metE	DNA‑binding transcriptional dual regulator MetR/cobalamin‑independent homocysteine transmethylase

CCGCAACGCTTGTAGCGTTTTCAGGTGTTTTACTTCGATCATGAAAGTCCTTCACTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATG  >  NC_000913/4012775‑4013055                                                                                                                                               |                                                                                                                                           agttcttcacgcgtggagttccccgcccaataactttcttgcgcttttttcagctcgcgacgcaggccaacgcgagggaaaccgagggtgtgattcaatattgtcattttttcttcctctaattatatgtaaatcctatggat                                                                                                                                            >  2:216871‑M1/143‑143 (MQ=255)   gaaaCTCTTGTAGCTTTTTCATGTGTTTTACTTTGATCATTACAGTCCTTCACTTCGGCATGAATAATTTGCGATTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCttt                                                                                                                                          <  1:279399/141‑1 (MQ=255)   gCAACGCTTGTTGCTTTTTCTGGTGTTTTACTTCGATCATGAAAGTCCTTCACTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCttt                                                                                                                                          <  1:280041/143‑1 (MQ=255)   gCAACGCTTGTAGCGTTTTCAGGTGTTTTACTTCGATCATGAAAGTCCTTCACTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGGTGTGTAAACATCTGGACGGCTAAAGTCCTTCGTCttg                                                                                                                                          >  1:22559/1‑142 (MQ=255)     aaCGCTTGTAGCGTTTTCAGGTGTTTTACTTCGATCATGAAAGTCCGTCACTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTa                                                                                                                                        <  2:216180/143‑1 (MQ=255)      ttcacgcgtggagttccccgcccaataactttcttgcgcttttttcagctcgcgacgcaggccaacgcgagggaaaccgagggtgtgattcaatattgtcattttttcttcctctcattatatgtaaatcctatggatcttgc                                                                                                                                       <  2:150754‑M1/6‑6 (MQ=255)        gCTGGTAGCGTTTGCAGGTGTTTTACTTCGATCATGAAAGTCCTTCACTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAAt                                                                                                                                     <  1:99270/143‑1 (MQ=255)               gCGTTTTCAGGTGTTTTACTTCGATCATGAAAGTCCTTCACTGCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGt                                                                                                                              <  1:268868/143‑1 (MQ=255)                       aGGTGTTTTACTTCGATCATGAAAGTCCTTCACTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAACTTTATGGTGCGTTGGc                                                                                                                      >  2:115363/1‑143 (MQ=255)                       aGGTGTTTTACTTCGATCATGAAAGTCCTTCACTTCGGAATGAATACTTTGCGCTTGAGGAATATACACTAACCGCCAATTATGGATGTGTAAACATCTCGCCGGCTAAAATCCTTCGCTCTTTAAATTTAAGTTTCGTTGGc                                                                                                                      >  2:370803/1‑143 (MQ=255)                                 cgtCGATCATGAAAGTCCTTGACTTCGGCATGAATAATTTGCGCGTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTtctc                                                                                                            <  1:26194/141‑1 (MQ=255)                                 cTTCGATCATGAAAGTCCTTCACTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTtctc                                                                                                            <  1:295456/143‑1 (MQ=255)                                  ttCGATCATGAAAGTCCTTCACTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGAAGGCTAAAATCCTTCGTCTTTTAAATTGATGGGGAGTTGGCTGCGTTtcgtc                                                                                                           >  2:217041/1‑140 (MQ=255)                                         aTGAAAGTCCTTCACTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCgg                                                                                                    >  1:254357/1‑143 (MQ=255)                                           gAAAGTCCTTCACTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGATGCGTTTCTCCACCCCGGTc                                                                                                  >  1:246050/1‑143 (MQ=255)                                            agaGTCCTTCACTTCCGCATGAAGAATTTGCGCTTGAGGAATATACAGTATCCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGTCTGCGTTTCTCCACCCCGTTCa                                                                                                 <  2:33127/141‑1 (MQ=255)                                                      aCTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGGAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAg                                                                                       <  2:212811/143‑1 (MQ=255)                                                             cATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTc                                                                                <  2:316/143‑1 (MQ=255)                                                              acgAATCATTTGCGCTTGACGAATCTACAGTACCCGCCAACTATGGATGTGTACACATCTGGACGGCTAAACTCCTCCGTCTTTTACATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTcc                                                                               <  1:626/141‑1 (MQ=255)                                                                gAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAACAGCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACACAGGTCACTTCATTCATTAAGCtgcac                                                                             >  2:184870/1‑139 (MQ=255)                                                                  gccaacgcgagggaaaccgagggtgtgattcaatattgtcattttttcttcctctaattatatgtaaatcctatggaTTTTAAATTTATGGTGNGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCggg                                                                           <  1:235799‑M1/66‑1 (MQ=255)                                                                   taatTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCgggg                                                                          >  1:196044/1‑143 (MQ=255)                                                                      tttGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATg                                                                       >  1:382119/1‑143 (MQ=255)                                                                           gcTTGAGGAATATACAGTTACCGCTTATTATGTATGTGTAAACATCTGGACGGCTAAACTCCTTCGTCTTTTAAAGTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATaa                                                                  <  1:148369/143‑1 (MQ=255)                                                                            cTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAAGaaa                                                                 >  1:224052/1‑143 (MQ=255)                                                                                aGGAATATACAGTAACCGCCACTTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTCTTAACTTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTg                                                             <  2:25565/143‑1 (MQ=255)                                                                                  gAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTCACATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGAGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGCTGAATAACCTTgcc                                                           >  2:259428/1‑143 (MQ=255)                                                                                      ataCAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCt                                                       <  1:257799/143‑1 (MQ=255)                                                                                             attcagtattgtcattttttcttcctctaattctatgtccttcctacggaTGTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTaa                                                >  2:235799‑M1/51‑143 (MQ=255)                                                                                                 gCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTc                                            <  1:73915/143‑1 (MQ=255)                                                                                                   tattgtcatttgttcttcctctaattatatgtaaatccttcgtcTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCaa                                          >  1:17325‑M1/45‑143 (MQ=255)                                                                                                    aaTTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCaaa                                         <  1:2205/143‑1 (MQ=255)                                                                                                        aTGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATcc                                     <  2:74732/143‑1 (MQ=255)                                                                                                           ttttttgttcctctaattatatgtaaatccttcgtcTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCTCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATa                                  >  2:14357‑M1/37‑143 (MQ=255)                                                                                                                gtAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCCCTTACTTCAGTAAGCTCCCGGGGATGACTAAACTTCCCGCCTTCCCTAAATTCACAATACGTAGGttt                             >  1:120195/1‑143 (MQ=255)                                                                                                                 tAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGAttt                            >  2:312033/1‑143 (MQ=255)                                                                                                                         tGGACGGCTAAAATCCTTCGTCTTGTAAAGTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATaa                    <  2:54610/143‑1 (MQ=255)                                                                                                                          ggACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCGATAGGATGTACATATAAt                   >  2:266489/1‑143 (MQ=255)                                                                                                                                    aaTCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGgaaga         >  1:128024/1‑143 (MQ=255)                                                                                                                                         ttCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGaaaaaa    <  1:257062/143‑1 (MQ=255)                                                                                                                                           cGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGTAGAAAAAATg  <  1:353181/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                           CCGCAACGCTTGTAGCGTTTTCAGGTGTTTTACTTCGATCATGAAAGTCCTTCACTTCGGCATGAATAATTTGCGCTTGAGGAATATACAGTAACCGCCAATTATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATG  >  NC_000913/4012775‑4013055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.