| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4012917 = | 30 (1.450) | 4 (0.200) | 4/256 | NT | 12.3% | intergenic (‑101/‑136) | metR/metE | DNA‑binding transcriptional dual regulator MetR/cobalamin‑independent homocysteine transmethylase |
| ? | NC_000913 | 4013018 = | 28 (1.400) | intergenic (‑202/‑35) | metR/metE | DNA‑binding transcriptional dual regulator MetR/cobalamin‑independent homocysteine transmethylase | |||||
ATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAGCGCAAGAAAGTTATTGGGCGGGGAACTCCACGCGTGAAGAACT > NC_000913/4012878‑4013159 | aTGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATcc < 2:74732/143‑1 (MQ=255) ttttttgttcctctaattatatgtaaatccttcgtcTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCTCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATa > 2:14357‑M1/37‑143 (MQ=255) gtAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCCCTTACTTCAGTAAGCTCCCGGGGATGACTAAACTTCCCGCCTTCCCTAAATTCACAATACGTAGGttt > 1:120195/1‑143 (MQ=255) tAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGAttt > 2:312033/1‑143 (MQ=255) tGGACGGCTAAAATCCTTCGTCTTGTAAAGTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATaa < 2:54610/143‑1 (MQ=255) ggACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCGATAGGATGTACATATAAt > 2:266489/1‑143 (MQ=255) aaTCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGgaaga > 1:128024/1‑143 (MQ=255) ttCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGaaaaaa < 1:257062/143‑1 (MQ=255) tatggattttgaatttagggaaggcggcaagtttattcatccccgggagcttactgaagtaagtgaccgaggtggagaaacgcagccaacgcaccataaatttaaaaGACGAAGGATTTACATATAATTAGAGGAACaaaaaa > 2:14357‑M2/108‑143 (MQ=255) cGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGTAGAAAAAATg < 1:353181/143‑1 (MQ=255) TTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGCTGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAat < 2:183657‑M1/143‑1 (MQ=255) TTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATACACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATCATCAGAGGAAGAAAAAATGACAat < 2:184937‑M1/143‑1 (MQ=255) ttgaatttagggaaggcggcaagtttattcatccccgggagcttactgaagtaagtgaccggggtggagaaacgcagccaacgcaccataaatttaaaaGACGAAGGATTTACATATAATTAGAGGAAGAACAAATGACAata > 1:17325‑M2/100‑143 (MQ=255) aaaTTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTGAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATAtt > 1:379717/1‑143 (MQ=255) aTTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGCTTCACATATAATTAGAGGAAGAAAAAATGACAATATTGa > 2:159667/1‑143 (MQ=255) ttagggaaggcggcaagtttattcatccccgggagcttactgaagtaagtgaccggggtggagaaacgcagccaacgcaccataaatttaacaTCCGTAGGAAGGACATAGAATTAGAGGAAGAAAAAATGACAATACTGAAt > 2:235799‑M2/94‑143 (MQ=255) ggTGCGTTGGCTGCGTTTCTCCACCCCGGCCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATcaca < 1:259428/143‑1 (MQ=255) ttGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAACCACACCCTCg > 2:180353/1‑143 (MQ=255) gctcCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTcgc < 1:208413/142‑1 (MQ=255) gcACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAAGTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGtt < 2:224180/142‑1 (MQ=255) cccgggagcttactgaagtaagtgaccggggtggagaaacgcagccaacncaccataaatttaaaaTCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGc < 1:235799‑M2/77‑1 (MQ=255) cttacttCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAGATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGGTTCCCTCGCGATAGCCTACGAcgc > 2:321497/1‑143 (MQ=255) tcttCTGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTGACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAg < 1:160226/142‑1 (MQ=255) cttCAGTAAGCTCCCGGCGATGAATAAACTGGCCGCCTTCCTGAAATTCAAAAGCCATAGGATTTACATACTTTTAGAGGAAGAAAAAATGACAATATTGAATCACACCTTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGc < 1:27801/143‑1 (MQ=255) ttCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGAAAATATGGAATCACAACACAAGTGTCCCTCGCGTTGGCCTGCGTCGCGCGCt > 2:297373/1‑143 (MQ=255) aGCACCCGGGGATGAATAAACTTGCCGCCTTCCCTAAAGTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGaaaaaa < 1:185163/143‑1 (MQ=255) cacccGGGGATTAAACAACTTGCCGGCTTCACTAAATTCCAAATCCAAAAAACTTACTACCGTTTAGAGGAAGAAAAAATGACAATATGGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAgc < 2:237709/141‑1 (MQ=255) gAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAGCGCAAGAAAGtt < 1:115363/143‑1 (MQ=255) aaTAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATGTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCATCGGTTTCCCTCGAGTAGGCCTGCGTCGAGAGCTGAAAAACGCGCAAGAAAGTTa > 2:32172/1‑143 (MQ=255) aaTAAACGTGCCGGTGTCCCTAAATGCAAAATACACAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAGCGCAAGATAGTTa < 2:330252/143‑1 (MQ=255) cgcgccTTCCCTAAATTCAAAATCCATAGGATGTACATATAATTAGAGGAAGAAAAAATGACAATATTGAAGCACACCCTCGGTTTCCCGCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAGCGCAAGAAAGTTATTGGGCggg < 2:120195/141‑1 (MQ=255) gccTTCCCTAAATTCAAAATCCATAGGATAAACAAGGAAAAAGGGTAAGAAAAAATGACAATATTGGAACACGCGCTCGATTGCCCTCGCGTTTGCCTGCGTCGCGATCGGAAAAAACCGCGAGAAAGTTAGTGGGCGGGGaa > 2:194311/1‑143 (MQ=255) ccTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAGCGCAAGAAAGTTATTGGGCGGGGAAc < 2:106066/143‑1 (MQ=255) tCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAGCGCAAGAAAGTTATTGGGCGGGGAACTcc < 2:128024/143‑1 (MQ=255) cTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAGCGCAAGAAAGTTATTGGGCGGGGAACTCCAcg > 2:332072/1‑143 (MQ=255) cTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAGCGCAAGAAAGTTATTGGGCGGGGAACTCCAcg > 1:165897/1‑143 (MQ=255) gcaagaTCCATAGGATTTACATATAATGAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAGCGCAAGAAAGTTATTGGGCGGGGAACTCCACGCGTgaa < 2:150754‑M2/137‑1 (MQ=255) aTCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAGCGCAAGAAAGTTATTGGGCGGGGAACTCCACGCGTGAAGAACt > 2:216871‑M2/2‑143 (MQ=255) | ATGGATGTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAATGACAATATTGAATCACACCCTCGGTTTCCCTCGCGTTGGCCTGCGTCGCGAGCTGAAAAAAGCGCAAGAAAGTTATTGGGCGGGGAACTCCACGCGTGAAGAACT > NC_000913/4012878‑4013159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |