New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2067353NA (NA)5 (0.250) 4/258 NT 29.9% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 2079471 = 12 (0.580)intergenic (‑110/+62) yeeX/yeeA DUF496 domain‑containing protein YeeX/putative transporter YeeA

GGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATA  >  NC_000913/2079350‑2079610
                                                                                                                         |                                                                                                                                           
gttAGTTTACATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGc                                                                                                                        <  1:383698/141‑1 (MQ=255)
               tataCCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAagcagca                                                                                                         <  1:386407/143‑1 (MQ=255)
               ctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttccatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTATCATACCCTTTATCCTTGCTGAATCGAagcagca                                                                                                         >  1:368178‑M2/107‑143 (MQ=255)
                     ccagATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTCTTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTCTCATACCCTTAATCCTTGCTGAATCGCAGCAGCACCAAga                                                                                                   >  2:178840/4‑143 (MQ=255)
                             tgtgAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTg                                                                                           <  2:374441/143‑1 (MQ=255)
                                         aTTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCCGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGact                                                                               >  2:359055/1‑141 (MQ=255)
                                                 tcatgatgaaccctgttccatggctccagatgacaaaagtgttctcatatcagggacttgttcgcaccttccCTATCATAACCTTTATCATTACCGAATCGAAGCAGCAGCAAGATGATCATGAAGGCCGAGAATTATTTgcg                                                                       >  2:324777‑M2/73‑143 (MQ=255)
                                                          cTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATGAGCGCAAAGccgg                                                              >  2:332259/1‑141 (MQ=255)
                                                              tgttccatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCaa                                                          >  1:146743‑M2/60‑143 (MQ=255)
                                                                      gCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCACGGCAAATCAGAtt                                                  >  1:277765/1‑143 (MQ=255)
                                                                          ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGAt                                              >  1:363561‑M2/48‑143 (MQ=255)
                                                                          ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGAt                                              >  1:360919‑M2/48‑143 (MQ=255)
                                                                          aCATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTGTTTGCGCCAGGCCCGGCAACTCACATTCgcg                                              >  1:12554/1‑141 (MQ=255)
                                                                                    tAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGCAGTTCAGGAATTATTTGCGCAAGGCAAGGCGATTCAGGGTGGATGGCAACtaca                                    >  2:295891/1‑140 (MQ=255)
                                                                                            gCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATgc                            <  2:302532/143‑1 (MQ=255)
                                                                                                        gCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAGTCAGATTCGATAGCAACTCAAGCTGGTGGGCCGGTTCCATg                >  2:46918/1‑143 (MQ=255)
                                                                                                              aTCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATACGCCGTTTCCATGTGCAGc          >  2:251561/1‑143 (MQ=255)
                                                                                                                      ccACTATCATACCCGTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATa  <  1:209791/142‑1 (MQ=255)
                                                                                                                         |                                                                                                                                           
GGTAGTTTCCATTTTTATACCCCTGATAATGTGAGAGTCGGATTCGTTTAAGCAACCGCTATTCGTTAGGGCCAACATTACTCATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCAAGCTGATGCGCCGTTTCCATGTTCAGCCACACATA  >  NC_000913/2079350‑2079610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.