| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_000913 | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4001644 | 1 (0.030) | 45 (1.200) | 43/264 | NT | 97.8% | coding (219/951 nt) | corA | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter |
| ? | NC_000913 | 4001650 = | 1 (0.030) | coding (225/951 nt) | corA | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter | |||||
TATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4001505‑4001644‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTA > NC_000913/4001650‑4001786 TATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGCCCTCGAAGCATCGGCACGTTTCTCTGAAGACGACGACGACCTACAACTC > 1:606793/1‑143 gagTGATCTTGTCGAACCGGACGACCACGAGCGACTGCGCGTACAATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTC < 2:388250/140‑1 GATGGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCTGCCTGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTC < 1:719880/143‑1 ATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTTAACTT‑‑‑‑‑‑GGCCAATGCATGGCAACCAGCACGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCT > 1:15135/1‑143 GATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAAATGGAAGAAAAAGAAACAACGACACGTTTCTTTAAAGAAGACGACGGCCTGCATCTCCTACTGCT > 1:428333/1‑143 ATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACCT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCATGCAACTCCTTCTTCTT > 1:456850/1‑143 gGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCCGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTT < 1:300092/142‑1 TGTCGAACTGTACGACGACGAGCCACTGCGCGTACACTCTGAACTTGGCCACGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTC < 2:357396/143‑1 cCGAACCCGACGAAGACGAGGGACTGCGCGCACAATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTCGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGA < 1:127201/142‑1 AACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTGTGACCACCACGACCGCCTGCACCTCCTTCTTCTGCTTCGAAGA > 2:539768/1‑143 GGACGACGATGAGCTACGGCGCGTACGATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCG < 2:402239/143‑1 GGACGACGACGAGCGACTGCGCGTACAATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGCAGCATCGGCACGTTTCTTTGAAGACGAAGAAGGCCTGCATCTCCTTATTCTTCTTTGAAGATGCG > 1:617760/1‑143 cACGCCGACGGGCGACTGCGCGTACGATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACAGCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGG < 2:677140/142‑1 gtCGACGAGGGACTGCGCGTATAATCTGAAGTT‑‑‑‑‑‑GGCCATAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGTATCGGCACGTTTCTTTGAAGACGACGCCGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAG < 2:44880/141‑1 GACGACGAGCGACTGCGCGTACAATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTCTGAAGATGCGGAAG > 1:538226/1‑143 GAGCGACTGCGCGTACAATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTACTTCTTTGAAGATACGGAAGATCACG > 1:453037/1‑143 CGCGTACAAACTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACT < 1:354188/143‑1 tTACAATTTGAAATT‑‑‑‑‑‑GCCCAGAGCCTGTCATCCGGTCCGGTACTGGATGACATCTAACCATCGCCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCGTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCA < 2:542215/142‑1 TACAATCTGAACTT‑‑‑‑‑‑GGACAGAGCCTGGCAACCCGACGGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTGTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCAC < 1:491413/143‑1 AATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACGCGGTGCGACACGCAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGT < 2:538608/143‑1 ATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTCTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTG < 2:490453/143‑1 TGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGAATACGCCGGTAACTACACTATGGCA > 1:179351/1‑143 AACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATTGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGGATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATT < 2:286781/143‑1 CTT‑‑‑‑‑‑GGCCATTGCCTGGCAACCCGCTCGGAACTGGAAGACATCGAAGTATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTA < 1:413338/143‑1 GCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGATGGCCTGCATCTCTTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCAT < 1:398825/143‑1 gccaatCAACCCGCCCGCAACTGGAAGACATCGAAGCAAGGGCACGTTTCTTCGAAGACGACGACGGCCTGCATCTCCTTCTTCGTCTTTGAAGATGCGGAAGAGCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGA < 1:41778/137‑1 CCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGGTTCTTTGAAGACGACCACGGCCTGCATCTCCTTCTTCTTCATTAAAGATGCAAAAGATCACGCCGGGAACTCCACTGTGGCATTTACCATGCGTGAT > 1:757624/1‑143 CCTGGCAACCCGCCCGGAACGGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGAT < 2:701235/143‑1 CTGGGAACTCGCCCTGAACTGGAAGACATCGATGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTGCTTCTGCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATG < 1:108102/143‑1 CTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTACTTTGAAGATGAGGAAGAACACGACGGTAACTCCACTGTGGCATTTACCATCCGTGATG > 1:308526/1‑143 CAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCG > 2:463254/1‑143 CGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACAACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACCGTAGCATGTACCATAAGTTATGGTAGTCTGT > 1:769812/1‑143 gtctGGAACTGGAAGACATCGAAGCATCGTCAGGTTTCTTTGAAGACGACGTCGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCTCTGTGGCATTTACCATCCGTGATGGTCGTCTGTT < 2:75327/139‑1 GCCCGGTACTGGTAGACATCTGAGCATTGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTTTTCTTTGAATATGCGGAAGATTACGCCGGTAACTCCATTGTTGCTTTTTTTATCCGTGATGGTCGTCTGTT < 2:135170/143‑1 CTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGCTCACGCCGGTACCTCCACTGTGGCATTTACCACCCGTGCTGGTCGTCTGTGTCCTCTGC > 2:140150/1‑143 GACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGC < 2:22347/143‑1 ACATCGAGTCATCGGCACGTTTCTTTTAAGACGACGACTGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCG < 2:113118/143‑1 ATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGACGATCCCGCCGGTAACTCCACTGTGGCATTTACCCTCCGTGATGGTCGTCTGTTTCCTCTGCGTGAGCGTG > 1:675184/1‑143 TCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCtgga > 1:442553/1‑139 TCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGA < 1:205304/143‑1 GAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGACTGTATACTCTGCGTGAGCGTGAAC > 1:454339/1‑143 GAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCAGTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAAC < 2:647112/143‑1 AGCATCGGCACGTTTCTTTGAAGACGACGACTGTCTGCATCTCCTTCTGCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTG < 1:741561/143‑1 GCACGTTTCTTTGAAGACGACGACTGCCTGCAGCTCCAGCGTCTTCTGTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGGCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTT < 1:161481/143‑1 GCACGTTTCTTTGAAGACGACGACGGCCTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGACCGCaa > 1:560537/1‑141 CTGCATCTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTA > 1:361961/1‑143 TATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTT‑‑‑‑‑‑GGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4001505‑4001644‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTA > NC_000913/4001650‑4001786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |