New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	5 (0.130)	24 (0.730)	20/232	NT	75.7%	coding (290/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	1209619 =	11 (0.330)					pseudogene (37/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment

ATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1207944‑1207790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTG  >  NC_000913/1209619‑1209755                                                                                                                                                                                                                                                                                                      ATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTT                                                                                                                                                       >  2:350021/1‑143    CCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAAGCGGCGCGTCCTAATGTAACCGTCGCTGCATGGAGTGTTGCAACTTCTa                                                                                                                                                    >  2:441867/1‑142                         TGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAA                                                                                                                               <  1:566450/143‑1                          GCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAAT                                                                                                                              <  1:531742/143‑1                           CGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCACCGTTTATGAAAATG                                                                                                                             >  2:686779/1‑143                           CGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATG                                                                                                                             <  1:427073/143‑1                           CGGCATTCCACCCCCACTGAATGATTACTGATTGCGCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTCCTGCATAGAGCTTTGGTCCTTCCCCCGAACCAACGTTCATGAAAATG                                                                                                                             >  2:285595/1‑143                             GCATTCCACCCCCACGGAATGATTACTGAATGCCCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAA                                                                                                                           <  1:86317/143‑1                              cagTCCACCCGCACTGAATGATTACTGATTGCTCAATACCACCACTCATGACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGGTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAG                                                                                                                          <  2:374648/140‑1                               agcCCACCCCCACTGAATTATGACTTATTGCTCAATCCCACCAATCATAACCGGTATAGCTATGGAATCGTTGCTTCCTAACCTAGCCGTTGCTGCAGTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGA                                                                                                                         <  2:670672/140‑1                               ATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCAGAACCGGTAGAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGA                                                                                                                         <  1:495948/143‑1                                 TCCACCCCCTCTGTATGATTACTGATTGCTCAATACCACCAATCATAACCGGTTTAGCTATGATACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAA                                                                                                                       <  2:215623/143‑1                                 TCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAA                                                                                                                       <  2:98779/143‑1                                            TGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAAACAACGTTTATGAAAATGAAGAAATAACAAGCAAA                                                                                                            >  1:513204/1‑143                                                                      tctatTCATATCCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGGTTTGCGCCTTCTCCCAAACCAACGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGG                                                                                  <  2:114797/138‑1                                                                       CCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCATTTACAAGGag                                                                                 >  2:312210/1‑141                                                                       CCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCGAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGG                                                                                 <  1:218540/143‑1                                                                        CAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAACTAAAAGTCAAATGGCATCATTCCTGCTTTTACCAGGGGG                                                                                >  2:538626/1‑143                                                                         AATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGA                                                                               <  1:540093/143‑1                                                                          ATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCTCAATCCAACTTTTATGAAAATGAAGAAATAACAAGAAAAGGGAATAATTCCAGATTTTACCAGGGGagt                                                                              >  2:622351/1‑140                                                                               AACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCCTTGAGTTTTGCTCCTTCTCCCAAACCAAAGTATATAAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTATACCAGGGGGAgcaaac                                                                         >  1:428335/1‑137                                                                                     TATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT                                                                   <  1:539567/143‑1                                                                                                                TGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCACAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTGTATCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAT                                        <  2:35993/143‑1                                                                                                                  TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCACAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGA                                      <  1:629158/143‑1                                                                                                                        ttgttttATTGATTTTTGTTTCCTCTCACAAAACAACGTTTATGAAAATGAAGAAAAAACAAGCAAAAGGCATCATAACTGCTTTTACCAGGGGGATTTAACATCCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAA                                <  1:53131/136‑1                                                                                                                               ATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAT                         <  2:724394/143‑1                                                                                                                                          CTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAA              >  1:565910/1‑143                                                                                                                                             CTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTTTGTCCGCGTATCAACAAATAACAAGAACACAAATCTACAACGTAATGC           >  1:633108/1‑143                                                                                                                                                CTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCT        <  1:538626/143‑1                                                                                                                                                CTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACAAGAAAACAGATATAAAACGTAATACGat        >  2:305834/1‑141                                                                                                                                                   ctAAACTAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAA     <  1:686779/141‑1                                                                                                                                                   CCAAACCAACTTTTATGAAACTAAAGAAATAACAAGCAAATGGCATCATTCTTGCTTTTACTAGGGGGATTTAACATGCTGATTGGCTATGTACGCGTATCAACAAATGCCCAGAACACAGATCTACAACGTAATGCGCTGAA     <  1:151309/143‑1                                                                                                                                                   CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACACCGTAGTGCGCTGAA     >  1:482904/1‑143                                                                                                                                                    CAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGTACACTGATCTACAACGTATTGCGCTGAAC    >  1:144940/1‑143                                                                                                                                                      AACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTG  <  2:509875/143‑1                                                                                                                                                      AACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAAAACACAGATCTACAACGTAATTCGCTGAACTG  >  1:340375/1‑143                                                                                                                                                                                                                                                                                                      ATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1207944‑1207790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTG  >  NC_000913/1209619‑1209755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.