| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 5 (0.130) | 24 (0.730) | 20/232 | NT | 75.7% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 11 (0.330) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
CCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTG > NC_000913/1209487‑1209755 | ccTTTGCCAGGTCCTGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGCGGCTGAAGGCGACGGAACCGGGACCCCCACCGGGAACGCCGAGCCTTCCCCCAAACCCACATCTAAGaaa > 2:374897/1‑143 (MQ=255) tgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa < 1:566450‑M2/12‑1 (MQ=255) gcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAt < 1:531742‑M2/13‑1 (MQ=255) cggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccacCGTTTATGAAAATg > 2:686779‑M2/130‑143 (MQ=255) cggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATg < 1:427073‑M2/14‑1 (MQ=255) cggcattccacccccactgaatgattactgattgcgcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttcctgcatagagctttggtccttcccccgaaccaaCGTTCATGAAAATg > 2:285595‑M2/130‑143 (MQ=255) gcattccacccccacggaatgattactgaatgcccaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa < 1:86317‑M2/16‑1 (MQ=255) gCCAGGTCCGGGTATTCTGCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCGGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa < 2:283557/143‑1 (MQ=255) cagtccacccgcactgaatgattactgattgctcaataccaccactcatgaccggtatagctatgaaaccggtgcgtcctaatgtagccggtgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaag < 2:374648‑M2/17‑1 (MQ=255) attccacccccactgaatgattactgattgctcaataccaccaatcagaaccggtagagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaaga < 1:495948‑M2/18‑1 (MQ=255) agcccacccccactgaattatgacttattgctcaatcccaccaatcataaccggtatagctatggaatcgttgcttcctaacctagccgttgctgcagtgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaaga < 2:670672‑M2/18‑1 (MQ=255) tccaccccctctgtatgattactgattgctcaataccaccaatcataaccggtttagctatgataccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGaaa < 2:215623‑M2/20‑1 (MQ=255) tccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGaaa < 2:98779‑M2/20‑1 (MQ=255) ccGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTGGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa < 1:369968/143‑1 (MQ=255) ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTGCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa < 1:478567/143‑1 (MQ=255) tgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaacaaCGTTTATGAAAATGAAGAAATAACAAGCaaa > 1:513204‑M2/113‑143 (MQ=255) tctattcatatccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgaggtttgcgccttctcccaaaccaaCGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:114797‑M2/57‑1 (MQ=255) ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCATTTACaaggag > 2:312210‑M2/86‑141 (MQ=255) ccaatcataaccggtatagctatgaaaccggtgcgtccgaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg < 1:218540‑M2/58‑1 (MQ=255) caatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAACTAAAAGTCAAATGGCATCATTCCTGCTTTTACCAggggg > 2:538626‑M2/85‑143 (MQ=255) aatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:540093‑M2/60‑1 (MQ=255) atcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctctcaatccaaCTTTTATGAAAATGAAGAAATAACAAGAAAAGGGAATAATTCCAGATTTTAccaggggagt > 2:622351‑M2/83‑140 (MQ=255) aaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgccttgagttttgctccttctcccaaaccaaAGTATATAAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTATACCagggggagcaaac > 1:428335‑M2/78‑137 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCtt < 1:539567‑M2/72‑1 (MQ=255) ttGGCGGAGCGGCTTAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGATGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACTAGGGGGATTTAACATGCTTAt < 2:48426/143‑1 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc > 1:403371/1‑143 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATCACAAGCAAATGGCATCCTTCCTGCTTTTACCAGGGGAATTTAAAATGCTTATTGGCTATGTACGCGTATca > 1:253414/1‑143 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac > 1:509875/1‑143 (MQ=255) aCGGAACCGGGACACCAAAAGGTAATGCAGAGCCTTCTCCAAAACTGACGTTTATGAAAATGACGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAGTTAACATGCTTCTTGGGTAAGTACGCGTATcagc > 1:694006/1‑141 (MQ=255) tgtagccgttgctgcattgagttttgctccttctcacaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTGTATCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt < 2:35993‑M2/99‑1 (MQ=255) tagccgttgctgcattgagttttgctccttctcacaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa < 1:629158‑M2/101‑1 (MQ=255) ttgttttattgatttttgtttcctctcacaaaacaaCGTTTATGAAAATGAAGAAAAAACAAGCAAAAGGCATCATAACTGCTTTTACCAGGGGGATTTAACATCCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 1:53131‑M2/107‑1 (MQ=255) ccAACAGGTAATGCAGAGCCTTCTCCCAAACCAACTTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca < 2:435866/143‑1 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 2:724394‑M2/114‑1 (MQ=255) aaTGCAGAGCCTTCTCCCAACCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAc < 1:125527/143‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa > 1:565910‑M2/19‑143 (MQ=255) ccTTCTCCCAAACCGAGCGTTATCAAAATTAGGAAATAACAAGCAAATGGCACCATTAGTATTGTTAGCAGGGGAATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATg < 2:264140/143‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTTTGTCCGCGTATCAACAAATAACAAGAACACAAATCTACAACGTAATgc > 1:633108‑M2/16‑143 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt < 1:538626‑M2/131‑1 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACAAGAAAACAGATATAAAACGTAatacgat > 2:305834‑M2/13‑141 (MQ=255) ctaaactaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa < 1:686779‑M2/134‑1 (MQ=255) ccaaaccaaCTTTTATGAAACTAAAGAAATAACAAGCAAATGGCATCATTCTTGCTTTTACTAGGGGGATTTAACATGCTGATTGGCTATGTACGCGTATCAACAAATGCCCAGAACACAGATCTACAACGTAATGCGCTGaa < 1:151309‑M2/134‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACACCGTAGTGCGCTGaa > 1:482904‑M2/10‑143 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGTACACTGATCTACAACGTATTGCGCTGAAc > 1:144940‑M2/9‑143 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtg < 2:509875‑M2/137‑1 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAAAACACAGATCTACAACGTAATTCGCTGAACtg > 1:340375‑M2/7‑143 (MQ=255) | CCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTG > NC_000913/1209487‑1209755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |