New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4628744 =	NA (NA)	3 (0.080)	3/250	NT	NA	noncoding (1/37 nt)	other	REP354b
	?	NC_000913	4628775 =	NA (NA)					noncoding (32/37 nt)	other	REP354b

AAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGAT  >  NC_000913/4628602‑4628881                                                                                                                                               |                                                                                                                                          gcgcgcggggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatgccggatgcggcgcgaacgccttatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggc                                                                                                                                           >  1:590156‑M1/143‑143 (MQ=255)  aaaCCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGcc                                                                                                                                          >  1:58477/1‑143 (MQ=255)      ctgggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatgccggatgcggtgcgaacgccttatccggactacaaaaccagcaatttcaatacgttgtcaaactgtagaCCTGAt                                                                                                                                      <  2:111539‑M1/6‑1 (MQ=255)       tgggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagttatgcgtaaaatgccggcttcggcgcgaacgccttatccggactacaaaaccagcagataaaatacgatgtaaaagtggaggCGtgaga                                                                                                                                     <  1:120938‑M1/7‑3 (MQ=255)        ctctGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGc                                                                                                                                    <  1:694350/143‑1 (MQ=255)         tctGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCg                                                                                                                                   >  1:628956/1‑143 (MQ=255)             gAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGc                                                                                                                               <  1:264124/143‑1 (MQ=255)             gAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGc                                                                                                                               >  2:116111/1‑143 (MQ=255)               agagGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCCGATGCGACGCtt                                                                                                                             >  1:260848/1‑143 (MQ=255)                 agGCGGTCTAGATTAACCAAGTTTTGAAGAAACCTTCGCGGGTGACCGGCCACGAAATTGTGGATGCTAAGGCTGTTGTAGTCCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTAc                                                                                                                           <  2:133268/143‑1 (MQ=37)                       tCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTc                                                                                                                     >  2:551695/1‑143 (MQ=255)                       tCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTGCACGCCGCATCCGGCATGCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTc                                                                                                                     >  1:157168/1‑143 (MQ=255)                          agaTTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCTGCCACGAAATTGAGGAAGCTAAGGCTGTTGTAGACAGGAAATGGTGTTCATGCAGCATCCGGCCTGCGGTGCACAATGCGTGATGCGACGCTTACcccgagtta                                                                                                                  >  2:121999/1‑138 (MQ=255)                            aTTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATACGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTATTATc                                                                                                                >  1:425103/1‑143 (MQ=255)                            aTTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGATGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTCATc                                                                                                                >  2:409640/1‑143 (MQ=255)                             ttAAACAAGGTTTGAAAAAACCTGCACAAGACTTGAGGCACGATATTGAGGATGCTAAGGCTGTTGTATACCGACAATTCTTCTCTCTCCGCTGCCGGCATTGGGTTCTCAATTCTTCGTGCGACTCTTACCGCGTCTTATCa                                                                                                               >  2:582273/1‑143 (MQ=255)                               aaaCAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGACACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCATATCAgg                                                                                                             >  1:248960/1‑143 (MQ=255)                                aaCAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGc                                                                                                            >  2:391750/1‑143 (MQ=255)                                 cgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatgccggatgcggcgcgaacgccttatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggCCTGATGCGACGCTTACCGCGTCTTATCAGGcc                                                                                                           >  2:239048‑M1/111‑143 (MQ=255)                                      gTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCCTTCGGTGCTCAATGCCTGATGCGACGCGTACCGTGTCTTATCAGGCCTAAAg                                                                                                      >  1:447498/1‑143 (MQ=255)                                        ttGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGtt                                                                                                    >  2:466296/1‑143 (MQ=255)                                          gacaacaCCTGCACGGGTGACCCGCCACGAAGTTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGtttt                                                                                                  <  2:765490/137‑1 (MQ=255)                                           caaaccccTGCACGGCTCACCCGCCACGTAATCGCGGAGGCTCAGGCTGTTGTAGCGCGTCAAAGGAGCGATGGCGGCATACGACCTGCAGTTGTTAATGCCTTATGCAGCGCTTACCCCGTCTTATCAGGCCTACAGTTTTa                                                                                                 <  2:543935/137‑1 (MQ=255)                                           acaagcgtggtgcgaagtaatgggtaagatgccggatgcggcgcgaacgccttatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTa                                                                                                 >  2:690195‑M1/101‑143 (MQ=255)                                           aaaaaaCCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTa                                                                                                 >  2:270991/1‑143 (MQ=255)                                            caagcgtattgcgaagtaatgcgtaaaatgccggatgcggcgcgaacgccttatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTAc                                                                                                >  1:372443‑M1/100‑143 (MQ=255)                                                  cTGCACGGGTGACCCGCCACGAAAATGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGGCTTCTCAGGCCACCCGTTTTACAACGTa                                                                                          >  2:322540/1‑143 (MQ=38)                                                   tGCACGGGTGACCCGCCACGAAATTGATGATGTTAAGTCTGTTGTAGATCGGAATCTGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTAt                                                                                         <  1:353227/143‑1 (MQ=37)                                                           tGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCGTTCGGTGCTCAATGCCTGATGCGACGCGTACCGCGCCTTATCAGGCCTACAGTTGTACAACGTATTGAAATTg                                                                                 >  1:571427/1‑143 (MQ=255)                                                           tGACCCGCCACGAAATTGAGGACGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTg                                                                                 <  2:280754/143‑1 (MQ=255)                                                              cccGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATGGAAATTGCTg                                                                              >  2:655004/1‑143 (MQ=255)                                                              cccGCCACGAAATGGGGGAGGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTg                                                                              <  2:609843/143‑1 (MQ=255)                                                               ccGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATGGAAATTGCggg                                                                             >  2:642705/1‑143 (MQ=255)                                                                   cgtgatgttGACGATGCTAAGGCTGTTGTAGTCCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGTGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACTACGTATTGAAATTGCTGGtttt                                                                         <  2:651111/136‑1 (MQ=37)                                                                    aCGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTg                                                                        >  1:164790/1‑143 (MQ=255)                                                                     cGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGt                                                                       <  2:58477/143‑1 (MQ=255)                                                                     cGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGt                                                                       <  1:695015/143‑1 (MQ=255)                                                                        aaTTGAGGATGCTAAGGCTGTTGTAGCCCGGAACCGGTGTTCACGCCGCATCCGGCATTCAGTGCTCAATGCCTAATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCCGGTTTTGTAgg                                                                    >  1:144440/1‑143 (MQ=38)                                                                                  gCTAATGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGTGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAgg                                                          <  2:438629/143‑1 (MQ=255)                                                                                    tAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCg                                                        >  1:215759/1‑143 (MQ=255)                                                                                    tAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCg                                                        >  1:478752/1‑143 (MQ=255)                                                                                       ggCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTc                                                     >  1:745903/1‑143 (MQ=255)                                                                                         tggttgtAGACCGCAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTcgc                                                   <  2:50194/141‑1 (MQ=255)                                                                                           gttgtAGTCTGGAATCGTTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGGCGCTTACCGCGTCTTATCAGTCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTCCgcgc                                                 <  2:637686/143‑1 (MQ=37)                                                                                           gttgtAGTCCGGAACCGGTGTTCACGCCTCATCCGGCATTCGGTGCTTAATGCCTGATGCGACGCGTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCgcgc                                                 <  1:288301/143‑1 (MQ=38)                                                                                            ttgtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGcgcc                                                <  1:116111/143‑1 (MQ=255)                                                                                                               ttCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGGTGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTCTTGAAATGGCTGGTTTTGTAGGCCGGATAAGGCAGTCGCGCCGCATAGGGCGTATTACGCa                             >  2:442890/1‑143 (MQ=37)                                                                                                               tgcACGCCGCATCCGGCATTCGGTGCTCAATGCCGGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCa                             <  1:121999/141‑1 (MQ=255)                                                                                                                  aCGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACGGCGTCTTATCAGGCCGACAGTTTTAAAACGTATTGAAATTGCTGGTTTTGTAGGGCGGATAAGACGTTAGCGCCGCATACGACATTATACGCATTa                          >  2:415151/1‑143 (MQ=37)                                                                                                                        cATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                    <  2:763083/143‑1 (MQ=255)                                                                                                                          tCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGACGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCCCaa                  >  2:176915/1‑143 (MQ=255)                                                                                                                          tCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATCGCAATTCCTGGTTTTGTGGGCCGGACAAGGCGTTCGCGCCGCATCCGGCATTTTACGCCTTCCTTCGcca                  >  1:521947/1‑141 (MQ=38)                                                                                                                             ggCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTAGTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATAc               <  1:644303/143‑1 (MQ=255)                                                                                                                                 ttCGGTGCTCAATTCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCCGGTTTTGTAGGCCGTATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATATGCtt           <  2:131009/143‑1 (MQ=255)                                                                                                                                  tCGGTGCTCAATGCCTGATGCGACGCTTAGCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTg          >  2:547938/1‑143 (MQ=255)                                                                                                                                          cAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTCTACtttct  >  2:65773/1‑140 (MQ=255)                                                                                                                                               |                                                                                                                                          AAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGAT  >  NC_000913/4628602‑4628881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.