New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4628744 =	NA (NA)	3 (0.080)	3/250	NT	NA	noncoding (1/37 nt)	other	REP354b
	?	NC_000913	4628775 =	NA (NA)					noncoding (32/37 nt)	other	REP354b

AACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGC  >  NC_000913/4628633‑4628916                                                                                                                                               |                                                                                                                                              aaCAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGc                                                                                                                                               >  2:391750/1‑143 (MQ=255)  cgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatgccggatgcggcgcgaacgccttatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggCCTGATGCGACGCTTACCGCGTCTTATCAGGcc                                                                                                                                              >  2:239048‑M1/111‑143 (MQ=255)       gTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCCTTCGGTGCTCAATGCCTGATGCGACGCGTACCGTGTCTTATCAGGCCTAAAg                                                                                                                                         >  1:447498/1‑143 (MQ=255)         ttGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGtt                                                                                                                                       >  2:466296/1‑143 (MQ=255)           gacaacaCCTGCACGGGTGACCCGCCACGAAGTTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGtttt                                                                                                                                     <  2:765490/137‑1 (MQ=255)            caaaccccTGCACGGCTCACCCGCCACGTAATCGCGGAGGCTCAGGCTGTTGTAGCGCGTCAAAGGAGCGATGGCGGCATACGACCTGCAGTTGTTAATGCCTTATGCAGCGCTTACCCCGTCTTATCAGGCCTACAGTTTTa                                                                                                                                    <  2:543935/137‑1 (MQ=255)            acaagcgtggtgcgaagtaatgggtaagatgccggatgcggcgcgaacgccttatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTa                                                                                                                                    >  2:690195‑M1/101‑143 (MQ=255)            aaaaaaCCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTa                                                                                                                                    >  2:270991/1‑143 (MQ=255)             caagcgtattgcgaagtaatgcgtaaaatgccggatgcggcgcgaacgccttatccggcctacaaaaccagcaatttcaatacgttgtaaaactgtaggCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTAc                                                                                                                                   >  1:372443‑M1/100‑143 (MQ=255)                   cTGCACGGGTGACCCGCCACGAAAATGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGGCTTCTCAGGCCACCCGTTTTACAACGTa                                                                                                                             >  2:322540/1‑143 (MQ=38)                    tGCACGGGTGACCCGCCACGAAATTGATGATGTTAAGTCTGTTGTAGATCGGAATCTGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTAt                                                                                                                            <  1:353227/143‑1 (MQ=37)                            tGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCGTTCGGTGCTCAATGCCTGATGCGACGCGTACCGCGCCTTATCAGGCCTACAGTTGTACAACGTATTGAAATTg                                                                                                                    >  1:571427/1‑143 (MQ=255)                            tGACCCGCCACGAAATTGAGGACGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTg                                                                                                                    <  2:280754/143‑1 (MQ=255)                               cccGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATGGAAATTGCTg                                                                                                                 >  2:655004/1‑143 (MQ=255)                               cccGCCACGAAATGGGGGAGGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTg                                                                                                                 <  2:609843/143‑1 (MQ=255)                                ccGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATGGAAATTGCggg                                                                                                                >  2:642705/1‑143 (MQ=255)                                    cgtgatgttGACGATGCTAAGGCTGTTGTAGTCCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGTGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACTACGTATTGAAATTGCTGGtttt                                                                                                            <  2:651111/136‑1 (MQ=37)                                     aCGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTg                                                                                                           >  1:164790/1‑143 (MQ=255)                                      cGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGt                                                                                                          <  2:58477/143‑1 (MQ=255)                                      cGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGt                                                                                                          <  1:695015/143‑1 (MQ=255)                                         aaTTGAGGATGCTAAGGCTGTTGTAGCCCGGAACCGGTGTTCACGCCGCATCCGGCATTCAGTGCTCAATGCCTAATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCCGGTTTTGTAgg                                                                                                       >  1:144440/1‑143 (MQ=38)                                                   gCTAATGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGTGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAgg                                                                                             <  2:438629/143‑1 (MQ=255)                                                     tAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCg                                                                                           >  1:478752/1‑143 (MQ=255)                                                     tAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCg                                                                                           >  1:215759/1‑143 (MQ=255)                                                        ggCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTc                                                                                        >  1:745903/1‑143 (MQ=255)                                                          tggttgtAGACCGCAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTcgc                                                                                      <  2:50194/141‑1 (MQ=255)                                                            gttgtAGTCTGGAATCGTTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGGCGCTTACCGCGTCTTATCAGTCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTCCgcgc                                                                                    <  2:637686/143‑1 (MQ=37)                                                            gttgtAGTCCGGAACCGGTGTTCACGCCTCATCCGGCATTCGGTGCTTAATGCCTGATGCGACGCGTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCgcgc                                                                                    <  1:288301/143‑1 (MQ=38)                                                             ttgtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGcgcc                                                                                   <  1:116111/143‑1 (MQ=255)                                                                                ttCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGGTGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTCTTGAAATGGCTGGTTTTGTAGGCCGGATAAGGCAGTCGCGCCGCATAGGGCGTATTACGCa                                                                >  2:442890/1‑143 (MQ=37)                                                                                tgcACGCCGCATCCGGCATTCGGTGCTCAATGCCGGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCa                                                                <  1:121999/141‑1 (MQ=255)                                                                                   aCGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACGGCGTCTTATCAGGCCGACAGTTTTAAAACGTATTGAAATTGCTGGTTTTGTAGGGCGGATAAGACGTTAGCGCCGCATACGACATTATACGCATTa                                                             >  2:415151/1‑143 (MQ=37)                                                                                         cATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                                                       <  2:763083/143‑1 (MQ=255)                                                                                           tCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGACGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCCCaa                                                     >  2:176915/1‑143 (MQ=255)                                                                                           tCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATCGCAATTCCTGGTTTTGTGGGCCGGACAAGGCGTTCGCGCCGCATCCGGCATTTTACGCCTTCCTTCGcca                                                     >  1:521947/1‑141 (MQ=38)                                                                                              ggCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTAGTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATAc                                                  <  1:644303/143‑1 (MQ=255)                                                                                                  ttCGGTGCTCAATTCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCCGGTTTTGTAGGCCGTATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATATGCtt                                              <  2:131009/143‑1 (MQ=255)                                                                                                   tCGGTGCTCAATGCCTGATGCGACGCTTAGCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTg                                             >  2:547938/1‑143 (MQ=255)                                                                                                   gtaaaactgtaggcctgataagacgcggtaagcgtcgcatcaggCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTg                                             >  1:372443‑M2/45‑143 (MQ=255)                                                                                                    taaaactgtaggcctgataagacgcggtaagcgtcgcatcaggCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATCTTACCCATTACTTCGCACCACGCTTGt                                            >  2:690195‑M2/44‑143 (MQ=255)                                                                                                           cAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTCTACtttct                                     >  2:65773/1‑140 (MQ=255)                                                                                                              ggcctgataagacgcggtaagcgtcgcatcaggCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACg                                  >  2:239048‑M2/34‑143 (MQ=255)                                                                                                                   GATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCg                             <  1:418583‑M1/143‑1 (MQ=255)                                                                                                                        gACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATACGGCATTTTAAGCATTACTTCGCAATACGATTGTACTTGATACGCTTCGGCTcc                        >  1:100231/1‑143 (MQ=255)                                                                                                                          cGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAg                      >  1:528874/1‑143 (MQ=255)                                                                                                                           gCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAgc                     >  1:630156/1‑143 (MQ=255)                                                                                                                                   tgccTTATCAGGCTTTCGGTTTGTCCACGTATTTAACTTGCTTGTTTTGTAGGCCGGATGAGGCGTTCACTCCGCACACGGCATGTTACTCATTCCCTGGCAATACGTTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTgc             <  2:503791/140‑1 (MQ=255)                                                                                                                                   cgTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTACGCAAAACGCTAGAACTTGATACGCTTCGGCTCCAGCGCGTCTgc             >  1:197090/1‑143 (MQ=255)                                                                                                                                     tCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGGTGCGCTTCGGCTCCAGCGCGTCTgcgc           >  1:71854/1‑143 (MQ=255)                                                                                                                                        tctcacgCCTCCACTTTTACATCGTATTTTATCTGCTGGTTTTGTAGTCCGGATAAGGCGTTCGCGCCGAAGCCGGCATTTTACGCATAACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCa        <  1:120938‑M2/136‑1 (MQ=255)                                                                                                                                        tATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCa        >  1:700138/1‑143 (MQ=255)                                                                                                                                         atcaggTCTACAGTTTGACAACGTATTGAAATTGCTGGTTTTGTAGTCCGGATAAGGCGTTCGCACCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAg       <  2:111539‑M2/137‑1 (MQ=255)                                                                                                                                              gCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCCgcgcgc  >  1:590156‑M2/2‑143 (MQ=255)                                                                                                                                               |                                                                                                                                              AACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGC  >  NC_000913/4628633‑4628916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.