New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1080908 =	40 (1.070)	4 (0.120)	3/240	NT	9.7%	intergenic (+95/‑448)	putP/efeU	proline:Na(+) symporter/inactive ferrous iron permease EfeU, N‑terminal fragment
	?	NC_000913	2229207 =	38 (1.120)					intergenic (+142/+231)	yohP/dusC	putative membrane protein YohP/tRNA‑dihydrouridine(16) synthase

CTATCATTCGGCTCCGCCGTCACGGTTGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATCGCGGATGGACGAAATTGC  >  NC_000913/1080774‑1081050                                                                                                                                        |                                                                                                                                               ggctggggcagcccccatggatgtgggctgagggcgcgttttacagggatgttacctcgcgcccgacccggtagccgtaagggataagccgagggcaccgcgcagcggcgattttgttcgccagagcccgggggtGCAggggg                                                                                                                                         >  1:498108‑M1/136‑143 (MQ=255)  gccggggcagcccacatggatgtgggctgagggcgcgttttacagggatgttacctcgcgcccgacccggtagccgtaagggataagccgagggcaccgcgcagcggcgattttgttggccagagcccgggggtGCAggcggc                                                                                                                                        <  2:564061‑M1/9‑1 (MQ=255)  gccggggcagcccacatggatgtgggctgagggcgcgttttacagggatgttacctcgcgcccgacccggtagccgtaagggataagccgagggcaccgcgcagcggcgattttgttcgccagagcccgggggtGCAGGGggc                                                                                                                                        <  1:657574‑M1/9‑1 (MQ=255)    tCATTCGGCTCCGCCGTCACGGTTGCAGGACAGCTAAGGGTCTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGggcggc                                                                                                                                     <  2:652941/143‑1 (MQ=255)      aTTCGGCTCCGCCGTCACGGTTGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCCGCAGCGGGTTGCGCTCCCTTAATCTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCACGCAagggagctcca                                                                                                                                   >  2:59040/1‑136 (MQ=255)               cgccgTCACGGTTGCAGGAAATCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATcgccgcc                                                                                                                          <  2:518869/143‑1 (MQ=255)                gtcgTCACGATTGCAGGAAATCTCAGGGACTTCGCCTGCGGTGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCGCCCTTCATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATcgccgccg                                                                                                                         <  2:683775/141‑1 (MQ=255)                     ctgggggctgggggcgcgttttacagggatgttacctcgcgcgcggcccggtagccgtaagggataagccgagggcagcgcgcagcggcgattttgttcgccagagcccgggggcGCAGGGGGCGGCCAATCGCCGCCGcccc                                                                                                                     >  2:24261‑M1/116‑143 (MQ=255)                      aCGGTTGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCACCCCct                                                                                                                   >  1:524077/1‑143 (MQ=255)                       gtgggctgagggcgcgttttacagagatgttacctcgcccccgccccggtagccgtaagggataagccgagggcaccgcgcagcggcgattttgttcgccagagcccgggggcGCAGGGGGCGGCCAATCGCCGCCGCCCCct                                                                                                                   >  1:247932‑M1/114‑143 (MQ=255)                             cAGGAAAGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGAGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTcc                                                                                                            >  2:736836/1‑143 (MQ=255)                                gAAAGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCACTCGCCGCCGCCCCCTGCTGTCCCgg                                                                                                         >  1:249685/1‑143 (MQ=255)                                 aaaGCTAAGGGGCTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTGGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGc                                                                                                        <  2:315887/143‑1 (MQ=255)                                    gCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCCGcccc                                                                                                     >  2:350614/1‑141 (MQ=255)                                      tAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATAGTGGCCGCGCACTGCTGTCCCGGCGttgg                                                                                                   >  2:42925/1‑141 (MQ=255)                                      tAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGAGGGTTGCGCTACCTTCATGTGCC‑CCCCCATATACATTGAATGCTACAGGGAGCGCGCAGGAGGCGGCAAATCGCGCCCCCCCCCTACTTGCCCGCCCCTCg                                                                                                   >  2:125509/1‑143 (MQ=255)                                       aaGGTACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTACTGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCgg                                                                                                  <  1:716305/143‑1 (MQ=255)                                           ggcTTGGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCGTAATGTGCC‑TCGCCATATAAATTGAAGGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGaa                                                                                              <  2:174364/141‑1 (MQ=255)                                           gACTTAGCCTGCGGCGGTTTTGTTTGGTTTCAGCAGCGTGTTGGGCTCCCTTAATGTGCC‑TCGCCATAAAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGaa                                                                                              <  1:397972/143‑1 (MQ=255)                                                  ccTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATAGAAATTGAATGGTGCCGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCGCTGCTGTCCCGGCCTGCGGGCAACGCTTcc                                                                                       >  2:65530/1‑142 (MQ=39)                                                   ttGCGGCTGTTTTGTTTGGCTTCCGCAGCGGGTGGCGGTCCCTTGATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGGAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCTCGGCCTTCGGGGAACGCTTCAg                                                                                      <  2:118818/142‑1 (MQ=38)                                                         cggTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGCACGCCTCAGCGCttt                                                                                >  2:432418/1‑143 (MQ=255)                                                            ttttGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTTAATGGTGCAGGGAGCGGGCAGGGTGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGCTTTTgc                                                                             >  2:258369/1‑142 (MQ=255)                                                             tttttttgGCTTCAGCAGCGGGTTGCGCTCAATTAATATGCT‑ACGGCATATAAATTGAATGGTACAGGTAGCGCGCAGGTGGCGGCAAATCGCTGCCGCCCCCTGCTGTCCCGGCTTTCGGGGAACGCATCAACGTtttttag                                                                            >  2:546546/1‑140 (MQ=255)                                                              ttgtttgGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTAAGAGAATTTGACg                                                                           >  1:630424/1‑143 (MQ=255)                                                                  tggtcTTCATCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGCGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGccac                                                                       <  2:180201/139‑1 (MQ=255)                                                                  tgggCTGCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATCGGATGGTGCAGGGAGCGGGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGccac                                                                       <  1:350614/141‑1 (MQ=255)                                                                      cTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCGCTGCGGTACCGGCCTGCGGGGAACGCTTCAGCGATTTTGACGCCACCAac                                                                   <  1:321264/143‑1 (MQ=255)                                                                      cTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGAATTGGAGGccaccacc                                                                   >  2:292528/1‑141 (MQ=255)                                                                            cagcGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCCTCAGCGATTTTGACGCCACCAACACCCGa                                                             >  2:507913/1‑143 (MQ=255)                                                                                 ggTTGCGCTCCCTTAATGTGCC‑TCGCCATACAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCGGTCCCGGCCTTCGGGGAACGCTTCAGCGAGTGTCAGGCCAACAAGACCCGGGCTgg                                                        >  1:269395/1‑142 (MQ=37)                                                                                  gTTGCGCTCCCTTAATGTGCCTTCGACA‑ATATAACAAATTGTTCTTTTTGTGCGCAGTGGTCGGCCATTTGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGtt                                                       <  1:476311/143‑1 (MQ=19)                                                                                    tGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTTGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGttat                                                     <  1:736836/143‑1 (MQ=255)                                                                                      cgcTCCCGTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGttatta                                                   <  1:675938/143‑1 (MQ=255)                                                                                          cccTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTCCCGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCCACCTGTTATCATGtt                                               >  1:65533/1‑143 (MQ=39)                                                                                           ccTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTCTGTTc                                              >  1:336205/1‑143 (MQ=255)                                                                                              tAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCgg                                           <  1:243580/143‑1 (MQ=255)                                                                                                   tgCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACGAACACCCGAGCTGTTGTTATGTTCCggggaca                                      >  1:306329/1‑139 (MQ=255)                                                                                                           ccATGTAAATGGAAGGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAg                               <  1:174352/143‑1 (MQ=255)                                                                                                           ccATATAAATTGAATGGTGCAGGTTGTGTGCTGGGTGCTGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAg                               <  1:84463/143‑1 (MQ=38)                                                                                                                    ttGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCGCTGCTGTCACGGCCTTCGGCGAACGCGTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGCCAAACAGGAAGAttttccaa                      >  2:200368/1‑138 (MQ=38)                                                                                                                      tcgccagagcccgggggtGCAGGGGGCGGCCAATCGCCGCCGCCCCct                                                                                                                   >  1:113607‑M1/19‑48 (MQ=255)                                                                                                                      tcgccagagcccgggggtGCAGGGGGCGGCCAATCGCCGCCGCCCCct                                                                                                                   <  2:113607‑M1/30‑1 (MQ=255)                                                                                                                           gTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGGTATTATGTTCCGGGCAAAAAGTTCGATTTGATAATTCCGGa               >  2:723058/1‑143 (MQ=255)                                                                                                                               aGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATCGCGGATGGa           >  2:625171/1‑143 (MQ=255)                                                                                                                                gggAGCGGGCGGGAGTCGGCGATTGGCGGGCGCCCGCTGTGGTTCCGGCGTTGGGGGAACGCTTCGGCGATTGTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATCGCGGATGGAc          <  2:245340/143‑1 (MQ=255)                                                                                                                                 ggAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGCTTTTGACGCCACCAACACCCGCCCTGTTATTCTGTTCCGGGCACACAGTTAGCTTTGATAATCGCGGATGGACg         >  2:100518/1‑143 (MQ=38)                                                                                                                                       cgcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATCGCGGATGGACGAAATTg   <  1:292528/143‑1 (MQ=255)                                                                                                                                        GCAGGGGGCGGCCAAGCGCCGCCGCTCCCGGCTGTCCGTGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATCGCGGATGGACGAAATTGc  >  2:282456‑M1/1‑143 (MQ=255)                                                                                                                                        |                                                                                                                                               CTATCATTCGGCTCCGCCGTCACGGTTGCAGGAAAGCTAAGGGACTTAGCCTGCGGCGGTTTTGTTTGGCTTCAGCAGCGGGTTGCGCTCCCTTAATGTGCC‑TCGCCATATAAATTGAATGGTGCAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCTGTCCCGGCCTTCGGGGAACGCTTCAGCGATTTTGACGCCACCAACACCCGAGCTGTTATTATGTTCCGGGCAAAAAGTTAGATTTGATAATCGCGGATGGACGAAATTGC  >  NC_000913/1080774‑1081050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.