New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1080908 =	40 (1.070)	4 (0.120)	3/240	NT	9.7%	intergenic (+95/‑448)	putP/efeU	proline:Na(+) symporter/inactive ferrous iron permease EfeU, N‑terminal fragment
	?	NC_000913	2229207 =	38 (1.120)					intergenic (+142/+231)	yohP/dusC	putative membrane protein YohP/tRNA‑dihydrouridine(16) synthase

TAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCC  >  NC_000913/2229073‑2229341                                                                                                                                       |                                                                                                                                       taatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCggg                                                                                                                                >  2:26701/1‑143 (MQ=255)   atGTCATCAGGTCCGAAAATAACGAGAATATTTCAGACTCTCATTCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACACCCGTGct                                                                                                                              >  1:321694/1‑143 (MQ=255)               cctaaaaTAACGAGAGTATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAAGCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACaaa                                                                                                                  <  1:551419/140‑1 (MQ=255)                cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGACCaaaa                                                                                                                 >  1:274929/1‑143 (MQ=255)                cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCCGGCTCGGGCGAACcaaa                                                                                                                 >  2:474075/1‑143 (MQ=255)                cGAAAATAACGAGAATATTTCAGTCACTCATCCTGTTGCGCTCCTGTCATCTGAGTGACGCCTTATAACAACTGCCGCATGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACaaca                                                                                                                 >  2:543834/1‑141 (MQ=18)                   aaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcg                                                                                                              <  2:709737/143‑1 (MQ=255)                       aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCCCTGGCGAACAAAATcgccgc                                                                                                          >  1:661231/1‑143 (MQ=255)                          gagaATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTgc                                                                                                       >  2:593335/1‑143 (MQ=255)                                        ttctcAGCCTGTTGCGCGCCTGTCAGGTGCATTGCTTCATAGAAGCACTGGCGCAAGGAGCGCGCAGGGGGCGGCAACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc                                                                                         <  1:28820/142‑1 (MQ=17)                                         tctgATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCt                                                                                        <  1:452993/143‑1 (MQ=255)                                         tctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCTGTGCCCTCGTCt                                                                                        >  1:100863/1‑143 (MQ=255)                                         tctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCCGCGCGGCGCCCTCGGcc                                                                                        >  2:178023/1‑142 (MQ=255)                                         tctcATCCTGCTGGCCCCCTGTCATGTGCATGGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCACTGCGCGGTGCCCTCGGCt                                                                                        <  1:147707/143‑1 (MQ=17)                                            cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTAt                                                                                     <  1:365401/143‑1 (MQ=255)                                              tgctggggcgcTCCTGGCATGTGCATGGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGGCCTCGGCTTATcc                                                                                   <  2:16973/136‑1 (MQ=17)                                                  gctGCGCTCCTGTCATGTGCATTGCTTCATATACTCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCATTCGCTGCCGTCCTCTGCATCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa                                                                               <  1:2702/141‑1 (MQ=17)                                                   ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCACTCGGCTTATAACTTAc                                                                              >  1:369464/1‑143 (MQ=255)                                                     gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAACATCGCCCCTCCGCGGTGCCCTCGGCCTATCCCTTACgg                                                                            >  2:769089/1‑143 (MQ=255)                                                     gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACgg                                                                            <  1:401878/143‑1 (MQ=255)                                                         tCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTAc                                                                        >  2:657574/1‑143 (MQ=255)                                                            tGTCATGTGCATTGCGTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGAGGTGCCCTCGGCTTATCCCTTACGGCTACCgg                                                                     <  2:398575/143‑1 (MQ=255)                                                               cATGTGCATTGCTTCATATAAGCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTc                                                                  <  1:459927/143‑1 (MQ=255)                                                                aTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGAGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGACCACACACGCAGCTGCGCGGCGCCCCCCACCAAACACTTACGCCTACCCGGtaa                                                                 >  2:7827/1‑141 (MQ=14)                                                                   tgctttgcttCATACAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgc                                                              <  2:490305/143‑1 (MQ=255)                                                                        tGCTTCATATAATCACTGGCGCGAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg                                                         <  2:545585/143‑1 (MQ=255)                                                                        tGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAACTCGCCGCTGCGCGGTGCCCTCGGCCTATCCCTTGAGGCGACCGGGTTTGGcgcggg                                                         >  2:91123/1‑141 (MQ=14)                                                                        tGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTCCGGCTACCGGGTCGGGcgcgcg                                                         >  2:519906/1‑141 (MQ=255)                                                                                  aaTCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCCGGTCGGGCCCGAGGTAACATccc                                               >  1:333699/1‑143 (MQ=21)                                                                                   gtCATTGGCGCAAGGAGCGCGCAGGGGGCGGTCAATCGGCGCCACCCCCTGTACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCt                                              <  2:225893/142‑1 (MQ=11)                                                                                   agcccTGGAGCAAGGAGCGCGCAGGGGGCGGCCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCt                                              <  1:474075/139‑1 (MQ=12)                                                                                   aTCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCt                                              >  1:665005/1‑143 (MQ=34)                                                                                          gcgcAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAc                                       >  1:482078/1‑143 (MQ=32)                                                                                           cgaaaGGAGCGCGGAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                                      <  1:210491/140‑1 (MQ=17)                                                                                            gcAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTCCCGGGTCGGGCGCGCGGTAACATCCCTGTAAACcgc                                     >  1:368324/1‑143 (MQ=12)                                                                                              aaGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCCCCACGTCACATCCCTGTAAAACccgc                                   >  1:41512/1‑143 (MQ=11)                                                                                                         agggggcggcggcgattggccgccccctgcGCCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGGCGGGGGCGAGGTAACATCTCTGTAAAACGCGCCCTCAGCCcac                        >  1:247932‑M2/31‑143 (MQ=255)                                                                                                         agggggcggcggcgattggccgccccctgcACCCCCGGGCTCTGGCGa                                                                                                                       >  1:113607‑M2/31‑48 (MQ=255)                                                                                                         agggggcggcggcgattggccgccccctgcACCCCCGGGCTCTGGCGa                                                                                                                       <  2:113607‑M2/18‑1 (MQ=255)                                                                                                           ggggcggcggcgattggccgccccctgcGCCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGCTGCCCTCGGCTTATCCCTTACGGCTACCGGGCCGCGCGCGAGGTAACATCCCTGTAAAACGcgcccccagcccccag                      >  2:24261‑M2/29‑142 (MQ=255)                                                                                                              gcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTACCATCCCTGTACAACGCGCCCTCAGCCCACCTCCa                   >  1:30252/1‑143 (MQ=12)                                                                                                                ggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCGTATCCCTTACGGCTACCGGGTCGGGCGCGGGGTAACGTCCCTGTCAAACGCGCGCTCCGCGCACATCCagg                 >  2:770400/1‑141 (MQ=11)                                                                                                                         ccgccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCAGGTCAGGCGCAATGTAACATACCAGTAAAAAGCGCCCTCAGGCCACATCCATATAGGCtcgc        >  1:197011/1‑140 (MQ=11)                                                                                                                              gccgcctgcACCCCCGGGCTCTGGCCAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGc   <  2:564061‑M2/134‑1 (MQ=255)                                                                                                                              gccccctgcACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGc   <  1:657574‑M2/134‑1 (MQ=255)                                                                                                                               ccccctgcACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGGGGGCTGCCCCAGcc  >  1:498108‑M2/9‑143 (MQ=255)                                                                                                                                       |                                                                                                                                       TAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCC  >  NC_000913/2229073‑2229341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.