New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1550509 =	50 (0.930)	3 (0.060)	3/248	NT	5.9%	coding (49/885 nt)	fdnH	formate dehydrogenase N subunit beta
	?	NC_000913	1550536 =	49 (0.960)					coding (76/885 nt)	fdnH	formate dehydrogenase N subunit beta

CACTCTGACGCCGAATGTCGGTGATGCAAACTCGCAAACGCCGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGACATCCGTGATGAAGTGGGGCACTGCGTCG  >  NC_000913/1550367‑1550650                                                                                                                                               |                                                                                                                                                tcctgtcggcggggttatcgtaaaccccgacgcagtgccccacttcatcacggatgtcgttccactccgaacacgccacctgacaggctttacagccgatacaggtggaaacgtcgataagttttgcgacttctgctttgtaa                                                                                                                                                 >  2:542878‑M1/143‑143 (MQ=255)    tctGACGCCGAATGTCGGTGATGCAAACTCGCAAACGCCGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCGGCGACTCACTCCCTct                                                                                                                                              >  1:87167/1‑142 (MQ=255)          gCCGAATGTCGGTGATGCAAACTCGCAAACGCCGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTCAGGGGGCGAACGGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCAcgccgc                                                                                                                                        >  2:547956/1‑143 (MQ=255)          gCCGAATGTCGGTGATGCAAACTCGCAAACGCCGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCAcgcagc                                                                                                                                        >  2:1039198/1‑143 (MQ=255)            cGAATGTCGGTGATGCAAACTCGCAAACGCCGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTAGCAAACGGTCCGCAACTAACTCCATCACGCCGCCt                                                                                                                                      >  1:785463/1‑143 (MQ=255)                       gATGCAAACGCGCAAACGCCGGAATATAACGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCg                                                                                                                          <  1:611882/143‑1 (MQ=255)                           cAAACTCGCAAACGCCGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCCTCACGCCGCCTGC‑TCAGGGGCGGGAt                                                                                                                      >  2:589319/1‑143 (MQ=255)                            aaaCTCGCAAACGCCGGAATATAAAGCGTTCTTAGGCAACATCGAGCAGGCGAAAGGGGGCGAACCGATGCCTATGGAACCGCAGGACATTAGCAAAAGGTCCGCGACGAACCACCTCACGCCGCCTGC‑TCAGCTGCGTggtc                                                                                                                     >  2:761410/1‑140 (MQ=255)                             agcTCGCAAACGCCGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTa                                                                                                                    <  1:825490/141‑1 (MQ=255)                              aCTCGCAAACGCCGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTCCGGAAACGCACGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTAc                                                                                                                   <  1:150299/143‑1 (MQ=255)                                  gCAAACGCCGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGCGGGCGAACAAATGTCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAg                                                                                                               <  1:144615/143‑1 (MQ=255)                                    aaaCGCCGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGCCCGCAACTAACTCCATCACGCCGCCTTC‑TCCGGTGCGTCATTACAAAGCa                                                                                                             >  2:493046/1‑143 (MQ=255)                                         ccGGAATATAAGGCGGTCGTGGGCAACTGCGAGATGGCGTAAGGGGGCTAACAGATGGCTATGGAAACGCAGGACATTATGAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGt                                                                                                        <  2:282220/143‑1 (MQ=255)                                         cacttcatcacggatgtcgttccactccgaacacgccacctgacaggctttacagccgatacaggtggaaacgtcgataagttttgcgacttctgctttgtaATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGt                                                                                                        >  1:131824‑M1/103‑143 (MQ=255)                                          cGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTc                                                                                                       >  2:256908/1‑143 (MQ=255)                                          cGGAAGAGAAAGCGTGCGTAGGCAACAGCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTc                                                                                                       <  1:588419/143‑1 (MQ=255)                                            gAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCACCTAACCCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGc                                                                                                     <  1:544485/143‑1 (MQ=255)                                                      cGTTCTTAGTCAACATCGCGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATc                                                                                           <  2:694937/143‑1 (MQ=255)                                                        ttCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATGAGCAAAAGGACCGCAACTAACACCATCACGCCGCCTTC‑TCAGGTGCGTGATTACGAACCAGAAGTCCCCAAACATATCgg                                                                                         >  2:415276/1‑142 (MQ=255)                                                        ttCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCGATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCGAAACTGATCgg                                                                                         >  1:828087/1‑142 (MQ=255)                                                           ttAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGTAAACGCAGGTACTTATCCACATGTCCGCAAATAACGCCATCACGCAGCCTTT‑GCAGGGACCGGACTACAAAGCTGCAGCGGCAAAGCTTATCAAcct                                                                                      >  2:530583/1‑141 (MQ=255)                                                            tAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGtt                                                                                     <  2:823918/143‑1 (MQ=255)                                                                ctaCATCGATAAGGCGTAAGTGGGCGAACAGATGGCTATGGAAACGCAGGACATGATCAAAAGGTCGGTACATAGCTTCTTCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCa                                                                                 <  1:396194/141‑1 (MQ=255)                                                                 aaCATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCACAACTTAGCGACGTTTCCAc                                                                                >  2:827513/1‑143 (MQ=255)                                                                  tccgaacacgccacctgacaggctttacagccgatacaggtggaaacgtcgataagttttgcgacttctgctttgtaATCACGCCGCCTTC‑TCAGGTGCGTGATTACaa                                                                                                                 >  2:585514‑M1/78‑109 (MQ=255)                                                                  tccgaacacgccacctgacaggctttacagccgatacaggtggaaacgtcgataagttttgcgacttctgctttgtaATCACGCCGCCTTC‑TCAGGTGCGTGATTACaa                                                                                                                 <  1:585514‑M1/32‑1 (MQ=255)                                                                    aTCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTCATCAGG‑CCGCGATTACAAAGCAGAAGCCGCAAAACTTCTCGACGTTTCCCCCTg                                                                             >  1:766385/1‑143 (MQ=255)                                                                    aTCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATCACAAAGCAGAAGTCGCAAAACGCATCGACGTTTCCACCTg                                                                             >  1:416494/1‑143 (MQ=255)                                                                       gagaAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCAt                                                                                                                                                >  2:153308/1‑74 (MQ=255)                                                                       gagaAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCAt                                                                                                                                                <  1:153308/74‑1 (MQ=255)                                                                        agaAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATc                                                                         >  2:941082/1‑143 (MQ=255)                                                                          aaGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCgg                                                                       >  1:863331/1‑143 (MQ=255)                                                                           aGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTACCTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGc                                                                      <  1:787474/143‑1 (MQ=255)                                                                              tgTAAGGGGGCGAACAGAGGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGt                                                                   <  2:211218/142‑1 (MQ=255)                                                                               gTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTa                                                                  >  2:650519/1‑143 (MQ=255)                                                                                     cggCGACCAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCt                                                           <  1:324795/142‑1 (MQ=255)                                                                                      ggCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACAAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCGACCTGTATCGGCTGTA‑GAGCCTg                                                          >  1:665543/1‑143 (MQ=255)                                                                                           aCAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCggg                                                     >  1:834786/1‑143 (MQ=255)                                                                                               aTGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAGCTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGc                                                 <  1:218526/143‑1 (MQ=255)                                                                                                 ggCTATGGAAACGCGGGACATTATCAAAAGGTCCGCAACTAACGCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCgt                                               <  2:201292/143‑1 (MQ=255)                                                                                                     ctGGAAGCGCAGGACATTATCAAAAGGTCCGCAACTAACTCCAGCACGCCGCCTTC‑TCAGGTGCGTGAGTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTc                                           <  2:1022544/142‑1 (MQ=255)                                                                                                       ggAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTCGATCGGCTGTA‑AAGCCTGTCAGGTGGCGGGTTCgg                                         >  2:866947/1‑143 (MQ=255)                                                                                                       ggAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGACTTG‑TCAGGTGCGGTATTAAAGAGCAGAAGTCGCACAACTTATCGACGTTTCCACCTGTATCGGCTGTC‑AAGCCTGTCAGGTTGCGTGCTCgg                                         >  2:747625/1‑143 (MQ=255)                                                                                                           aCGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGGGCGTGATTACAAAGCAGACGTCGCAACACTTATCGACGTTTCCACCTGTATCGACTGCA‑CAGCCTGTCGGGCGGCGTGTCCgctgtg                                     >  2:610629/1‑138 (MQ=255)                                                                                                            cGCAGGACATGATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTGCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTgg                                    <  2:26902/143‑1 (MQ=255)                                                                                                              cAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAGGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGaa                                  <  1:333135/143‑1 (MQ=255)                                                                                                               aGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAAc                                 >  1:537404/1‑143 (MQ=255)                                                                                                                 gACATTATCAAAAGGTCCGCAACTAAATCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGa                               >  2:325445/1‑143 (MQ=255)                                                                                                                       aTCAAAAGGTCCGCAACTAACGCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGACATCCg                         <  2:761589/143‑1 (MQ=255)                                                                                                                         cAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTAGAAACCAGACCTGT‑GCGTGTTCGGAGTGGAACGACATCCggg                       >  1:192992/1‑141 (MQ=255)                                                                                                                         cAAAAGGGCCGCAACTAACTCCATCACGCCGCCTAC‑TCAGGTGCGTGATTACAGAGCAGAAGGCGCAAAACTTATCGACGTTTCCACCTGTCTCGGCTGTA‑GAGCCTGTCAGGTGGCGTGTTCGAGGGGGAACGCCATCCCtg                       >  1:402489/1‑143 (MQ=25)                                                                                                                          aaaaGGTCCGCAACTAACTCCATCCCGCCGCCTTC‑TCAGGTGCGTGATTACCAAGCAGAAGTCGTTTGAACTCTGGTGTGTTCCACCTGTCTCGGCTGTA‑ACGCCTGTCAGGTGGCGTGTTCGGAGTGGGACGACATGCGtgg                      >  1:243779/1‑142 (MQ=19)                                                                                                                           aacggTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGACATCCGtgat                     >  2:805210/4‑143 (MQ=255)                                                                                                                           aaaGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGCCGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGACATCCGtgat                     <  1:212370/143‑1 (MQ=255)                                                                                                                           aaaGGTCCGCAACTAACTCCAGCACGCCGCCGTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAGACTTATCGACGTTTCCACCGGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGACATCCGtgat                     <  2:772976/143‑1 (MQ=255)                                                                                                                                   tgaactgactCCTTCACGCCGCCTTT‑GCAGGTGCGGGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTAGCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGCCATCCGTGATGAAGTggg             <  2:644052/141‑1 (MQ=25)                                                                                                                                        gaactCCATCACGCCGCCTTT‑TCAGGTGTGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCGCCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGACATCCGTGATGAAGTGGGGCACt        <  2:325006/142‑1 (MQ=255)                                                                                                                                          actCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGACATCCGTGATGACGTGGGGCACTGc      >  2:395237/1‑143 (MQ=255)                                                                                                                                            tCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGACATCCGTGATGAAGTGGGGCACTGCGt    >  2:941401/1‑143 (MQ=255)                                                                                                                                              cATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGGGGAACGACATCCGTGATGAAGTGGGGCACCGCGTCg  >  2:672394/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                                CACTCTGACGCCGAATGTCGGTGATGCAAACTCGCAAACGCCGGAATATAAAGCGTTCTTAGTCAACATCGAGAAGGCGTAAGGGGGCGAACAGATGGCTATGGAAACGCAGGACATTATCAAAAGGTCCGCAACTAACTCCATCACGCCGCCTTC‑TCAGGTGCGTGATTACAAAGCAGAAGTCGCAAAACTTATCGACGTTTCCACCTGTATCGGCTGTA‑AAGCCTGTCAGGTGGCGTGTTCGGAGTGGAACGACATCCGTGATGAAGTGGGGCACTGCGTCG  >  NC_000913/1550367‑1550650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.