New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2049991 =	52 (0.970)	3 (0.060)	3/252	NT	5.9%	coding (5054/7077 nt)	yeeJ	inverse autotransporter adhesin
	?	NC_000913	2050006 =	45 (0.870)					coding (5069/7077 nt)	yeeJ	inverse autotransporter adhesin

CCCCGTGACAGTTAGCGTGAACAATTATGGTGTCAGTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAACGGATGATCGGGGTTTCGCTGAAATTCTTGTGACAAGC  >  NC_000913/2049851‑2050127                                                                                                                                             |                                                                                                                                         tttcagtccgacctcggtgcttgtcacaagaatttcagcgaaaccccgatcatccgtttcaacgctggtgctgcttagcgtgacggaggttccgcggaaattaacttttatgccttctaccgggttgccgttagcgtcagTGa                                                                                                                                        >  1:1036990‑M1/141‑143 (MQ=255)     gTGACAGTTAGCGTGAACAATTATGGTGTCAGTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGCCGTCAGCACGACCGCGGGCGCAACCATCACGGc                                                                                                                                    >  2:193397/1‑143 (MQ=255)         cAGTTAGCGTGAACAATTATGGTGTCAGGGAGACGAAACAGGTGACCTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGc                                                                                                                                <  1:384777/143‑1 (MQ=255)              aGCGAGAACAATTGTGGCGCCACTGATACGAAACAGGTGACTCTGATTGCCGATGCTGGCACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCAc                                                                                                                           <  1:218068/143‑1 (MQ=255)                 gtgcttgtcacaagaatttcagcgaaaccccgatcatccgtttcaacgctggtgctgcttagcgtgacggaggttccgcggaaattaacttttatgccttctaccgggttgccgttagcgtcagTGACGGCAAGCGTCACTGa                                                                                                                        >  1:826243‑M1/125‑143 (MQ=255)                 gTGCACGATTATGGTGTCAGTGATACGAAGCAGGTGACTTGGATCGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGa                                                                                                                        <  2:726304/143‑1 (MQ=255)                 gTGAACAATTATGGTGTCAGTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGa                                                                                                                        <  2:1036117/143‑1 (MQ=255)                  tGAACAATTATGGTGTCAGTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTACTTAACCTCTGTATACTCATTCGTCGTCGGCACGACCGAGGGCGCAACCATGACGTCCAGCGTCCCTCAc                                                                                                                       >  2:931257/1‑143 (MQ=255)                  tGAACAATTATGGTGTCAGTGATACGAAACAGGTGACTACGATTGGTTATGCCTGGACCGCAAAGCGAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGAc                                                                                                                       <  1:718583/143‑1 (MQ=255)                    aaCAATTATGGTGTCAGTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCAGTGACGc                                                                                                                     <  2:277811/143‑1 (MQ=255)                     aCAATTATGGTGTCAGTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCCAGCGTCACTGACGCt                                                                                                                    >  2:336634/1‑143 (MQ=255)                     aCAATTATGGTGTCAGTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATCACGGCCAGCGTCCCTGACGcc                                                                                                                    >  2:39980/1‑142 (MQ=255)                           gtGGTGTCAGTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTGGCCGCCTTAACCTCTGTATACTGATTCGTCGTGAGCACGACCGAGGGCGCAACCATGGCGGCAAGCGTCACTGACGCTAACGGc                                                                                                              <  2:133447/142‑1 (MQ=255)                             ggTGTCAGTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTCTACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCaa                                                                                                            >  2:187740/1‑143 (MQ=255)                                  cAGTGATACGAAACCGGTGACGTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCgg                                                                                                       <  2:282674/143‑1 (MQ=255)                                   aGTGAGACGAAACAGGTGACTCTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGt                                                                                                      <  2:26635/143‑1 (MQ=255)                                    gTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACg                                                                                                                <  2:369148/132‑1 (MQ=255)                                    gTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACg                                                                                                                >  1:369148/1‑132 (MQ=255)                                       aTACGAAACACGTGACTTTGATGGCCTATGCTGCTACCGCAAACCTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGaa                                                                                                  <  2:385883/143‑1 (MQ=255)                                                   tgtcTTTGTTTTCCGATGCTGGCACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGtt                                                                                      <  1:811531/140‑1 (MQ=255)                                                    gaatttGATCGCCGATGCTGGCACCGCAAAACAAGCCTCCTGAACCCGTGTATACTCATTCGACGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAATCCGGTAGAAGGCATAAAAGTTa                                                                                     <  1:807951/140‑1 (MQ=255)                                                     aCTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTaa                                                                                    >  2:724677/1‑143 (MQ=255)                                                        ttGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAAttt                                                                                 >  1:504543/1‑143 (MQ=255)                                                           aTTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCcg                                                                              <  2:500356/143‑1 (MQ=255)                                                            ttGCCGATGCTGGTGCCGGAAAACGAGCCTCCTTAACCTCTGTATACTCATGCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCcgc                                                                             <  2:809751/143‑1 (MQ=255)                                                            ttGCCGAGGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCcgc                                                                             <  1:863064/143‑1 (MQ=255)                                                              gCCGGTGCTGGTACCGCAACACACGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCgg                                                                           <  2:884586/143‑1 (MQ=255)                                                              gCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCgg                                                                           <  2:235614/143‑1 (MQ=255)                                                               ccGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCAGGTAGAAGGCGTACAAGTTAATTTCCGCGGa                                                                          >  1:656324/1‑143 (MQ=255)                                                                      tGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGCCCACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGCACCTCCg                                                                   >  2:743587/1‑143 (MQ=255)                                                                       ggTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGAAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGt                                                                  >  1:809356/1‑143 (MQ=255)                                                                        gTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTc                                                                 >  1:879817/1‑143 (MQ=255)                                                                          aCCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCAc                                                               <  2:479997/143‑1 (MQ=255)                                                                            cGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCACCCATGACGGCCAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATGAACGTTAGTTTCCGCGGAACCTCCGTCACGc                                                             >  2:546852/1‑143 (MQ=255)                                                                                   cTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCTATTACGCCTTCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAagcag                                                      <  1:241285/143‑1 (MQ=255)                                                                                    tAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGAGTCACAGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAagcagc                                                     >  2:126322/1‑143 (MQ=255)                                                                                       cctcctTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTATCGGCAACCCGGCAGAAGGCATAAAAGTTAATTTCCCCGGCACCCCCCTCCCGCTAACCAGcccc                                                  >  2:962760/1‑143 (MQ=255)                                                                                       cctcctTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCAcc                                                  >  2:546747/1‑143 (MQ=255)                                                                                          cctTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGc                                               >  1:643009/1‑143 (MQ=255)                                                                                               aCCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCCGCACCAGCGTTGa                                          >  2:476103/1‑143 (MQ=255)                                                                                                  tctGAACACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAAc                                       <  1:22023/143‑1 (MQ=255)                                                                                                     gTATACGCATTCGTCATCCCCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACGGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAACGga                                    <  2:862688/143‑1 (MQ=255)                                                                                                      taacttttatgccttctaccgggttgccgttagcgtcagTGACGGCAAGCGTCACTGAc                                                                                                                       <  2:492196‑M1/20‑1 (MQ=255)                                                                                                      taacttttatgccttctaccgggttgccgttagcgtcagTGACGGCAAGCGTCACTGAc                                                                                                                       >  1:492196‑M1/40‑59 (MQ=255)                                                                                                        taCTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTACGCAGCACCAGCGTTGCAACGgttgc                                 >  1:397705/1‑142 (MQ=255)                                                                                                        taCTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCCGCACCAGCGTTGAAACGgatga                                 >  1:33341/1‑143 (MQ=255)                                                                                                        taCTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAACGgatga                                 >  1:458546/1‑143 (MQ=255)                                                                                                           tCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAACGGATGATCg                              >  1:31473/1‑143 (MQ=255)                                                                                                           tCATTCGTCGTCAGCACGACCGAGGACGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAACAGCAACCGAGTTTAAACGGAGGAACg                              >  2:354095/1‑143 (MQ=255)                                                                                                                  tcgtcAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTGCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAACGGATGATCGGGGTTTc                       <  1:227063/143‑1 (MQ=255)                                                                                                                         cACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAACGGATGATCGGGGTTTCGCTgcca                >  1:45973/1‑140 (MQ=255)                                                                                                                            gACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTCACACCGATGACCGCGGTTTCGCtaatactc             >  1:801909/1‑136 (MQ=255)                                                                                                                                    gcgcAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAACGGATGATCGGGGTTTCGCTGAAATTCTTGTGACa     >  1:579227/1‑143 (MQ=255)                                                                                                                                     cgcAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAACGGATGATCGGGGTTTCGCTGAAATTCTTGTGACaa    <  2:857762/143‑1 (MQ=255)                                                                                                                                      gcAACCATGACGGAAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAACGGATGATCGGGGTTTCGCTGAAATTCTTGTGACAAg   <  2:809356/143‑1 (MQ=255)                                                                                                                                       cAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAACGGATGATCGGGGTTTCGCTGAAATTCTTGTGACAAGc  <  1:115732/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                         CCCCGTGACAGTTAGCGTGAACAATTATGGTGTCAGTGATACGAAACAGGTGACTTTGATTGCCGATGCTGGTACCGCAAAACTAGCCTCCTTAACCTCTGTATACTCATTCGTCGTCAGCACGACCGAGGGCGCAACCATGACGGCAAGCGTCACTGACGCTAACGGCAACCCGGTAGAAGGCATAAAAGTTAATTTCCGCGGAACCTCCGTCACGCTAAGCAGCACCAGCGTTGAAACGGATGATCGGGGTTTCGCTGAAATTCTTGTGACAAGC  >  NC_000913/2049851‑2050127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.