New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3998036	47 (0.870)	5 (0.090)	5/258	NT	9.0%	coding (54/2163 nt)	uvrD	ssDNA translocase and dsDNA helicase ‑ DNA helicase II
	?	NC_000913	= 3998077	55 (1.040)					coding (95/2163 nt)	uvrD	ssDNA translocase and dsDNA helicase ‑ DNA helicase II

TATAATCAGCAAATCTGTATATATACCCAGCTTTTTGGCGGAGGGCGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCATACTCGATTATGGCGGTGACGTTTACCAACAAA  >  NC_000913/3997895‑3998177                                                                                                                                              |                                                                                                                                              tctactCAGCGAATCTCTATATATTCCCAGCTTTTTGGCGGAGGGCGTTGCGCTTCTCCGCCCATCCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAGCAGCGCGAAGCGGTgg                                                                                                                                              <  2:657201/138‑1 (MQ=255)        aGCAAATCTGTATATATACCCAGCTTTTTGGCGGAGGGCGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGTCAAACAGCGCGAAGCGGTGGCCGCGcc                                                                                                                                       >  2:504537/1‑143 (MQ=255)             aTCTGTGTCTATACCCGGCTCTTTGGCGGAGGGTGTTGCGCTTCTCCGCTCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACgca                                                                                                                                  <  2:283680/143‑1 (MQ=255)             aTCTGTATATTGACCCAGCTTTTTGGCGGAGGGCGTTGCGCTTCTCCGCCCAACCTCTTGTTCCGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCTGTGGCCGCGCCACgca                                                                                                                                  <  1:860630/143‑1 (MQ=255)                  tatatataCCCATCTTTTGGGCGGAGGGCGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAAc                                                                                                                             <  2:155590/143‑1 (MQ=255)                  tatatataCCCAGCTTTTTGGCGGAGGGCGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAAc                                                                                                                             <  1:903017/143‑1 (MQ=255)                        taCCCAGCTTTTTGGCGGAGGGCGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTg                                                                                                                       <  2:485557/143‑1 (MQ=255)                                tttttGGCGGAGGGCGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTggc                                                                                                               <  2:612349/143‑1 (MQ=255)                                  tttGGCGGAGGGCGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGgccgcgccacgcagcaccagaaggttgctgcgtg                                                                                                             <  1:774168‑M1/143‑35 (MQ=255)                                  gttGGCCGAGGGCGTTGCGCCTCTCCGCCCAGCCTATCTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTggcgg                                                                                                             <  2:615133/142‑1 (MQ=255)                                      gCGGAGGGCGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGcccgcgcccgccagcaccagaaggttgctgcgtggcgc                                                                                                         <  1:365069‑M1/143‑39 (MQ=255)                                       cGGAGGGCGTCGGGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGgccgcgcccgccagcaccagaaggttgctgcgtggcgcg                                                                                                        <  1:346166‑M1/143‑40 (MQ=255)                                        ggAGGGCGTGGCGCTTCTCCGCCCCACCTATTTTTACGCTGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGgcgggcgcgg                                                                                                       <  2:27501/143‑1 (MQ=255)                                         gAGGGCGTTGCGCTTCCCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGcccgcgcccgccagcaccagaaggttgctgcgtggcgcggc                                                                                                      <  2:880366‑M1/143‑42 (MQ=255)                                            ggCGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGcccgcgcccgccagcaccagaaggttgctgcgtggcgcggccac                                                                                                   <  2:647712‑M1/143‑45 (MQ=255)                                              cGTTGCGCTTCTCCGCTCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCGTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTg                                                                                                 <  1:727206/143‑1 (MQ=255)                                              cGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGCGCCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTg                                                                                                 <  1:339332/143‑1 (MQ=255)                                                 cgcgcTTCGCCGCCCAATCTATTTTTACGCGGCGGTGCCAATGGGCGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTa                                                                                              <  2:886629/142‑1 (MQ=255)                                                      ctctcCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTGTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGAcg                                                                                         <  1:985950/142‑1 (MQ=255)                                                         tcCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGAc                                                                                          >  2:112878/1‑139 (MQ=255)                                                         tcCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGAc                                                                                          <  1:112878/139‑1 (MQ=255)                                                           cGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGTTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGt                                                                                    >  1:449341/1‑143 (MQ=255)                                                               cAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTg                                                                                <  1:1050649/143‑1 (MQ=255)                                                               cAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACCCGCGGAccg                                                                                >  2:209839/1‑141 (MQ=255)                                                               cAACCTAGTTCTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTg                                                                                <  2:523692/143‑1 (MQ=255)                                                                 aCCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGt                                                                              <  1:834910/143‑1 (MQ=255)                                                                   cTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGCAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGc                                                                            >  1:966763/1‑143 (MQ=255)                                                                          gaCGCGGCGGGGCCAATGGACGTGTCGTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCCCGCAGCAACCTGCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTAt                                                                     <  2:790688/142‑1 (MQ=255)                                                                             gcggcgGTGCCAATGGACGTTTCATACCTGCTCGACAGCCTTAATGACCAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCAGGCCGTGGTAAGACACGAGTACTGGCGCATCGAATCGc                                                                  >  2:49323/1‑143 (MQ=255)                                                                                gcggTGCGAACGGACGTTGCCTACCTGCTCGACGGCCTGAATGACAAACAGCGCGGAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTg                                                               <  2:493203/143‑1 (MQ=255)                                                                                gcggTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTg                                                               <  1:774820/143‑1 (MQ=255)                                                                                     gCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTtga                                                          <  1:964758/143‑1 (MQ=255)                                                                                                  gcTTACCTGCTCGACAGCCTTAATGTCAACCAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGaaaa                                             <  2:311590/142‑1 (MQ=255)                                                                                                    ttACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGGGTGGAAAACt                                           >  1:751442/1‑143 (MQ=255)                                                                                                        cTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTc                                       >  1:104577/1‑143 (MQ=255)                                                                                                        cTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTc                                       >  2:243484/1‑143 (MQ=255)                                                                                                        cTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGACCGCGCCACGCACCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACACGCGTACTGGTGCATCGGATCGCCTCGTTGATAAGCGTGGAAAACCGCtt                                       >  2:25717/1‑142 (MQ=255)                                                                                                         tGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCg                                      >  1:759777/1‑143 (MQ=255)                                                                                                         tGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAACAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCg                                      >  1:446758/1‑143 (MQ=255)                                                                                                          gcccGACAGCCTTAATGACAACCAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGc                                     <  2:357642/140‑1 (MQ=255)                                                                                                          gCTCGACAGCCTTAATGACAAACAGCGCGACCCGTTTGTCGCGCGACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGGGCGTGGAACACTGCTctc                                     >  1:448279/1‑141 (MQ=255)                                                                                                              gACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGCTGAGCGTGGAAAACTGCTCGCCATa                                 >  1:730783/1‑143 (MQ=255)                                                                                                               aCAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGACACGCAGCAACCTTCTGGGGCTGGCGGTCGCGGGCGGTGGTACGACGCGCGTACTGGTGCAACGTAGCGCCAGGGACGTCACCGGGGAAAACTGCTCGCCCTAc                                >  2:15664/1‑143 (MQ=255)                                                                                                                 tgctttAATGACAAAGAGCGCGTAGCGGTTGCCGCGCCATGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCTTACTGGTGCATCGTATCGCCGTGTTGATGAGCGTGGAAAACTGCTCGCCATACTc                              <  2:62526/139‑1 (MQ=255)                                                                                                                      tAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGGTGATGAGAGTGGAAAAATGCTCGCCAGAccccagta                         >  2:625006/1‑136 (MQ=255)                                                                                                                         tGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGGACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCATACTCGGTTATgg                      >  1:836208/1‑143 (MQ=255)                                                                                                                          gACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGCTGATGAGCGTGCAAACCTGCTCGCGATCCTCGGTAATGGc                     >  1:352348/1‑143 (MQ=255)                                                                                                                           ccAAACATCGCGAAGCGGTGGCCGCGCCACGCAGCGACCTTCGGGTGCTGGGGGGCGGGGGCAGTGGTGAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCATACTCGATTATGGCg                    <  2:715580/142‑1 (MQ=255)                                                                                                                            cAAACAGCGCGGAGCGGGGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCATACTCGATTATGGCgg                   <  2:50699/143‑1 (MQ=255)                                                                                                                              aaCAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCAGACCCGCGCACGGCGGTg                 >  2:115739/1‑143 (MQ=255)                                                                                                                                ccgcgcGAAGCGGGCGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGGGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCATACTCGATTATGGCGGTGAc               <  2:425113/141‑1 (MQ=255)                                                                                                                                   cgcgAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCATACTCGATTATGGCGGTGACGtt            >  1:156872/1‑143 (MQ=255)                                                                                                                                   cgcgAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCATACTCGATTATGGCGGTGACGtt            <  1:127197/143‑1 (MQ=255)                                                                                                                                            gTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGcaccgcttcgcgctgtttgtcattaaggctgtcgagcaggtaagaaacgtccattggcaccgccgcgtaaaaataggttgggcggagaagcgcaacgcc   <  2:647712‑M2/143‑100 (MQ=255)                                                                                                                                            gTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCATACTCGATTATGGCGGTGACGTTTACcaacaa   >  1:961318/1‑143 (MQ=255)                                                                                                                                             tGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCATACTCGATTATGGCGGTGACGTTTACCAACaaa  <  1:836679/143‑1 (MQ=255)                                                                                                                                             tGGCCGCGCCACGCAGCAACCTTCTGGTGCGGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCATACTCGATTATGGCGGTGACGTTTACCAACaaa  <  1:813899/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              TATAATCAGCAAATCTGTATATATACCCAGCTTTTTGGCGGAGGGCGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAATGGACGTTTCTTACCTGCTCGACAGCCTTAATGACAAACAGCGCGAAGCGGTGGCCGCGCCACGCAGCAACCTTCTGGTGCTGGCGGGCGCGGGCAGTGGTAAGACGCGCGTACTGGTGCATCGTATCGCCTGGTTGATGAGCGTGGAAAACTGCTCGCCATACTCGATTATGGCGGTGACGTTTACCAACAAA  >  NC_000913/3997895‑3998177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.