New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 566777 =NA (NA)2466 (42.580) 271/280 0.0 97.7% noncoding (1/1258 nt) IS3 repeat region
?NC_000913 = 572471 59 (1.010)coding (6/456 nt) ybcN DLP12 prophage; DNA base‑flipping protein

Only 100 of 2502 total aligned reads displayed.

AGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/566918‑566777
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCGGAGTTGTTC  <  NC_000913/572471‑572329
                                                                                                                                                                                                                                                                                             
AGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGATTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGCGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGACCAG                                                                                                                                                >  2:37245/1‑143
 GCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGGCACCTCTGACTGAGAGTTTACTCACGTAGCCGCGTGTCCACTACTGCGGGGGAGGATCAGc                                                                                                                                               >  2:1060887/1‑142
 GCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGGTTTTTTCTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT                                                                                                                                               <  2:686921/143‑1
   TTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTTGTTGATACTGTTTCTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTC                                                                                                                                             <  2:270439/143‑1
   TTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTC                                                                                                                                             >  1:788798/1‑143
    TCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCA                                                                                                                                            <  2:908489/143‑1
     CAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCAC                                                                                                                                           <  2:464511/143‑1
       GGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGC                                                                                                                                         <  1:129692/143‑1
          CTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTC                                                                                                                                      <  1:285388/143‑1
          CTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACGATTGCTGGGTAAGATCAGTTCACGCTTC                                                                                                                                      >  1:832596/1‑143
          CTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCCTGTCCCCTATTGCTGGGTAAGATCAGTTCACGCTTC                                                                                                                                      >  2:975526/1‑143
           TTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCC                                                                                                                                     >  2:352314/1‑143
                TGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCGGTTCACGCTTCCCCTCC                                                                                                                                <  1:526209/143‑1
                TGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCC                                                                                                                                >  1:694250/1‑143
                 gcaAAAGTCAGTCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTTACGCTTCCCCTCCG                                                                                                                               >  2:186782/4‑143
                   GAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCA                                                                                                                             <  1:932572/143‑1
                    AAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAG                                                                                                                            <  1:653915/143‑1
                    AAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAG                                                                                                                            >  1:391968/1‑143
                     AATTCAGGCGAATGCTGCTTACGGGGTTTTTTACTGGTTGAAACAGAAGTGTGGGGGTGACTCACCTCCGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGA                                                                                                                           <  1:732905/143‑1
                      acTCAGGCGAATGCGGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAG                                                                                                                          <  1:913533/141‑1
                      ATTCAGGCGAATGCCGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAG                                                                                                                          <  1:1067846/143‑1
                       TTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGG                                                                                                                         >  2:958848/1‑143
                          AGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGGTGGGTAAGATCAGTTCACGCTTCCCCTCCGCCGAGGTCA                                                                                                                      >  2:574808/1‑143
                            GCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAA                                                                                                                    >  1:356623/1‑143
                            GCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAA                                                                                                                    >  2:493213/1‑143
                            GCGAATGCTGTTTACGGGGTTTTTTACTGGTTGAGACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAA                                                                                                                    >  2:132446/1‑143
                              GAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACG                                                                                                                  <  1:766548/143‑1
                                 TGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAcagcca                                                                                                               >  1:486796/1‑137
                                      TTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGC                                                                                                          <  2:595922/143‑1
                                             GGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCGGAGGTCAGACGCTAGATGCAAAGAAT                                                                                                   >  1:409420/1‑143
                                                 cttgACTGGTTTATACTGTGGCTCTGATATGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCA                                                                                               <  1:443176/139‑1
                                                 TTTTACTGTTTTCTCCTGTTTTTGTCCTGTGCGTCCCCTCTGTCTGAGACTTTACTCACTTAGCCGCGTGTCCACTATTGCTTGGTAGGATCAGTTCACGCGTCCTCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCA                                                                                               <  2:703082/143‑1
                                                         GTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATT                                                                                       >  1:818338/1‑143
                                                            gagcCTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGCTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCT                                                                                    <  2:3931/139‑1
                                                            GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCTGCGTGTCTACTATTGTTGGGTAAGATCAGTTCACGCTGCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCT                                                                                    <  1:67666/143‑1
                                                            GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCT                                                                                    <  2:330083/143‑1
                                                            GATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCT                                                                                    <  1:115148/143‑1
                                                            GATACTGTTTGTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCT                                                                                    <  1:1043630/143‑1
                                                               ACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCA                                                                                 >  1:574730/1‑143
                                                                 TGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATC                                                                               >  2:1009438/1‑143
                                                                 TGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATAGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATCGCAGGTGCATTTCTGCATC                                                                               >  2:809685/1‑143
                                                                   TTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTG                                                                             >  1:144683/1‑143
                                                                     TTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTG                                                                           >  1:426852/1‑143
                                                                       tggCATGGGGGTCACGTCTGAGTGAGAGTTTGCACGCTTAGCCGGGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAA                                                                         <  1:372670/140‑1
                                                                       TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAA                                                                         <  1:204755/143‑1
                                                                       TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAA                                                                         <  2:207071/143‑1
                                                                        gcCATGTGAGTCACCTCTGACTGAGAGTCTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAG                                                                        <  1:272124/141‑1
                                                                        GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAATCGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAG                                                                        <  1:1023078/143‑1
                                                                        GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAG                                                                        >  1:97030/1‑143
                                                                            TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAG                                                                    <  2:314887/143‑1
                                                                             GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGA                                                                   >  1:755326/1‑143
                                                                                ggtggCCTCGGACTGAGGGTGTACTCACTTAGGCGCGTGTGCACGATTGCTGGGGAAGAGCAGTTCACGCTTCCCCTCCGCAGAGGTCAAGCGCTAGATGGGAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGA                                                                <  2:234293/138‑1
                                                                                  ccacccgTGACTGAGCGTTTACTTACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCGCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTGCTGCATCTGTGAAGGGAGAAGAGA                                                              <  2:113190/136‑1
                                                                                    ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGT                                                            <  1:948865/143‑1
                                                                                     CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTT                                                           <  1:841674/143‑1
                                                                                       tccGACAGAGAGTTTATTCACTTAGTCCCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGACGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTG                                                         <  2:665430/140‑1
                                                                                       TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCACAGCATTGCAGGTGCATTTCTGCATCTGTGCAGGGAGGAGAGAGggtg                                                         >  1:46549/1‑139
                                                                                       TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTG                                                         >  1:508476/1‑143
                                                                                           ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAACATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATT                                                     <  2:832523/143‑1
                                                                                            CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGGGAGTTTGGATTG                                                    >  1:557867/1‑143
                                                                                             TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGGAGGGAGTTTGGAGTGT                                                   >  1:540547/1‑143
                                                                                             TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGGGAGTTTGGATTGg                                                   >  1:339775/1‑142
                                                                                             TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGT                                                   <  1:634157/143‑1
                                                                                             TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGGTTGGATTGT                                                   >  1:180630/1‑143
                                                                                              GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTA                                                  >  1:855270/1‑143
                                                                                               AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGCGAAGAGAGTTTGGATTGTAT                                                 >  1:744385/1‑143
                                                                                                GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGGGTTTGGATTGTATG                                                >  1:805638/1‑143
                                                                                                  GTTTACTCACTTAGCCGCGTGGCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTG                                              <  1:61962/143‑1
                                                                                                   TTTACTCACTGAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGC                                             <  2:749913/143‑1
                                                                                                        TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATA                                        >  1:883863/1‑143
                                                                                                        TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGGTTGGATTGTATGTGCGCATA                                        >  2:293928/1‑143
                                                                                                        TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGATAGATGCAAAGAATTGCAGGTGCATTTGTGCACGTGTGAAGGGAGAAGCGAGTTTGGAGAGTATGTGCTCATA                                        >  2:791220/1‑143
                                                                                                            TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGAGTGTATGTGCGCATAAACG                                    >  2:77009/1‑143
                                                                                                              aggCGCGTGTCCACTCTTGTTGGGTACGTTCAGTTCACGCTTCCCCTTCGCAGAGGTCAAACGCTTGATGTAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGCGAGTTTGGATTGTATGTGCTCATAAACGTC                                  <  2:518831/140‑1
                                                                                                                  GCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGCGAAGAGAGTCTGGATTGTATGTGAGCATAAACGTCCCCc                              >  2:41922/1‑142
                                                                                                                   CGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAATTTGGATTGTATGTGCGCATAAACGTCCCCGT                             <  2:624474/143‑1
                                                                                                                    GTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTT                            <  1:897249/143‑1
                                                                                                                    GTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTT                            <  1:58975/143‑1
                                                                                                                      GTCCACTAGTGGTGGGCAAGCTCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCAGCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTA                          <  2:642377/143‑1
                                                                                                                       TCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAG                         >  1:708571/1‑143
                                                                                                                       TCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCACCGTTTAG                         >  2:85703/1‑143
                                                                                                                        CCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTGGGATTGTATGTGCGCATAAACGTCCCCGTTTAGC                        >  1:302772/1‑143
                                                                                                                         CACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCG                       <  1:1001427/143‑1
                                                                                                                         CACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATAGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCG                       >  2:540139/1‑143
                                                                                                                          cCTATTGCGGGGTAAGTTCAGTTCACCCGTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCGGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGC                      <  2:555900/142‑1
                                                                                                                          ACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAACTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGC                      >  2:885447/1‑143
                                                                                                                              TTGCTGGGTAAGATCAGTTCACGCTGCCCCTCCGCAGAGGTCAAACGCTAGATGCAAATAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAA                  <  1:234655/143‑1
                                                                                                                               TGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAG                 >  2:15565/1‑143
                                                                                                                               TGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGCTTAGCGCAGAAG                 >  2:934795/1‑143
                                                                                                                                   GGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCAC             <  1:98449/143‑1
                                                                                                                                     GTAAGATCAGTTCACGCTTACCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTGCTGCATCTGTGAAGGGAGAAGAGAGTGTGGATGGTATGTGCGCATAAACGTGCGCGTATCGCGCAGAAGTaagac           >  2:44912/1‑138
                                                                                                                                      TAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCGG          >  1:869021/1‑143
                                                                                                                                      TAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCGG          >  1:322989/1‑143
                                                                                                                                      TAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCGG          <  1:255894/143‑1
                                                                                                                                         GATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCGGAGT       >  1:602047/1‑143
                                                                                                                                          ATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCGGAGTT      >  1:219916/1‑143
                                                                                                                                          ATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCGGAGTT      >  1:164380/1‑143
                                                                                                                                          ATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGAGCAGAAGTCACCGGAGTa      >  2:726808/1‑142
                                                                                                                                              GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCGGCGTTGTTC  >  2:252917/1‑143
                                                                                                                                              GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGCTTGGATTGTATGTGCGCATAAACGTCCCCGTATAGCGCCGAAGTCACCGGACTTGTTC  >  2:1031827/1‑143
                                                                                                                                                                                                                                                                                             
AGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/566918‑566777
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCGGAGTTGTTC  <  NC_000913/572471‑572329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.