New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	2466 (42.580)	271/280	0.0	97.7%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	59 (1.010)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGC  >  NC_000913/566635‑566909                                                                                                                                               |                                                                                                                                     agAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCt                                                                                                                                      <  1:653088/142‑1 (MQ=255)    aGATGGTAGAAATTAACGCTAAGTTCGTACGGAATGGAGTAATTGTATGACGGGCACAGAGTCAATCATTCATTACCTGGGGACGCATAAGAGCTTCTTTCCACTTGCCCTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                   <  2:481692/143‑1 (MQ=255)    aGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                   <  1:480041/143‑1 (MQ=255)    aGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATGCATTACCTGGTGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                   <  2:730418/143‑1 (MQ=255)    aGATCGCAGAAATGAGAGCTAGGTGCGGACTGAAAGGAGCAAGTGTATGACGGGCAACGCGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCCCAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                   <  2:710969/143‑1 (MQ=255)     gATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc                                                                                                                                  <  1:379518/143‑1 (MQ=255)      aTCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCt                                                                                                                                 >  1:979549/1‑143 (MQ=255)        cGCAGAAATTCAAGCTAAGTTCGTGTGGTAAGGAGCAAGTGGATGACTAGTAAGGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTa                                                                                                                               <  2:926440/143‑1 (MQ=255)             agaTTGAAGCTAAGTACGTGCCGAGAGGAGAACGTGCATGACGGGCACAGAGGCAATTATTGATCACCTGGGGGCGTATAAGAGCTGATGTGCACAGGCCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAg                                                                                                                          <  2:336159/141‑1 (MQ=255)                ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAAGTTACCCAGCaa                                                                                                                       >  2:634603/1‑143 (MQ=255)                ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCGGATCCTACCCAGCaa                                                                                                                       >  1:1014160/1‑143 (MQ=255)                  aaaGCTAAGTTCGGTCTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATGACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATa                                                                                                                     <  1:1031740/143‑1 (MQ=255)                     gCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                                                                                                  >  1:331764/1‑143 (MQ=255)                      cTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTgg                                                                                                                 >  1:919267/1‑143 (MQ=255)                      cTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGCAATCTGTTCTTACCCAGCAATAGTgg                                                                                                                 >  1:192051/1‑143 (MQ=255)                       tAAGTTCGGACTGAAAGGGGAAAGTGTAGGACGGGCAAAGAGGCAATTATTCATTGCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGa                                                                                                                <  2:261124/143‑1 (MQ=255)                              gggcTGGAAGGAGCAGGTGTCTGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                                                                                                         <  1:981903/140‑1 (MQ=255)                                   gcaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTagg                                                                                                    <  1:883184/141‑3 (MQ=255)                                    aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAGTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                   <  2:548235/143‑1 (MQ=255)                                    aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGGGGACACGCGGCGAAgc                                                                                                   >  2:792242/1‑142 (MQ=255)                                       ggAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTCTGCACAGGACGTTGCCGCGATAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg                                                                                                >  1:512776/1‑143 (MQ=255)                                            aaGTGTATGACGGGCAAAGAGGCAATTCTTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTACTCTGATCTTCCCCAGCAATAGTGGACACGCGGCTAAGTGAGTaggc                                                                                           >  1:36600/1‑140 (MQ=255)                                            aaGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc                                                                                           <  2:612447/143‑1 (MQ=255)                                              gtgtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAACAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGGGGACACGGGGCCGAGTCAGGAAAcgc                                                                                         >  2:523335/1‑141 (MQ=255)                                                   tGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtccgt                                                                                    >  1:826179/1‑143 (MQ=255)                                                   tGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAACAGCTTCTGGGCACAGGACGTTGCCGCGGTAACAGTCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt                                                                                    <  1:1016709/143‑1 (MQ=255)                                                      cGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag                                                                                 <  2:896403/143‑1 (MQ=255)                                                       gggCAAAGAGGCAATTATTCATTACCTGGGGCAGCAAGCGTTGTGCAGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAACCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGCAAACTCTCCGACaga                                                                                >  2:230861/1‑143 (MQ=21)                                                       gggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga                                                                                <  1:742581/143‑1 (MQ=255)                                                         gCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGGAAACTCGCGGACAGAgg                                                                              >  1:93836/1‑143 (MQ=255)                                                          cAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt                                                                             <  1:730919/143‑1 (MQ=255)                                                              gagGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGGAAACTCTCAGTCAGAGGTGACt                                                                         >  2:607579/1‑143 (MQ=255)                                                               agGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGATGACTc                                                                        >  1:848461/1‑143 (MQ=255)                                                               agGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGAAAGCTCTCAGTCAGAGGTGACTc                                                                        >  2:115504/1‑143 (MQ=255)                                                                 gCAATTATTCTTTACCTGGGTACGCATAAGAGCTTCTGTGCCACGGTAGTAGCCTCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac                                                                      <  1:731923/143‑1 (MQ=21)                                                                  cAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca                                                                     <  1:599748/143‑1 (MQ=255)                                                                   aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGGAACAGGGGCAAGCGTGCTCTGATCTTACCCAGCAGTAGTCGACACGCGACTACGTGAAGGACGTCTAGGCGAGAGGTGACTcacag                                                                    >  2:502265/1‑142 (MQ=255)                                                                   aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGAAGTTGCCGCGGTAAAAGGAGCAACCGTAATCTGATCTTACCCAGCAATACGGGACACGCGACCAAGAGAGCACACCCCCAGTCCGAGGCGCCTCACAt                                                                    >  2:134840/1‑143 (MQ=25)                                                                   aaTTAGTCACTACCTGGGGATGCAGAAGAGCTTCTGCGCAGAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                                    <  1:668892/143‑1 (MQ=21)                                                                    atttttCAGTGCCTGCGGTCGCGTAAGGGCTGCCTGCCACAGGCCGTTGCCGCGGTAACAGGCGCAACCGTAATCAGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg                                                                   <  2:1039514/143‑1 (MQ=17)                                                                     ttattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                                  <  1:422097/143‑1 (MQ=255)                                                                     tgattCAAAACCGGGGGACGCATGAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                                  <  1:92081/141‑1 (MQ=255)                                                                        ttCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa                                                               <  2:110467/143‑1 (MQ=255)                                                                            ttACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGGAAACTATCAGTCAGAGGTGACTCACAGGACaaaaaa                                                           >  1:117210/1‑142 (MQ=255)                                                                             tACCTGGGGACGAATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGGGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa                                                          <  2:883418/143‑1 (MQ=255)                                                                                cTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa                                                       <  2:979549/143‑1 (MQ=255)                                                                                  ggggACGCATAAGAGCTTGTGTGCACAGGAAGTTGCGGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGAGACGCGGCTAAGTGAGTAAACTATCAGTAAGAGGTGAACAAGATGACAAAAACAGTAta                                                     >  2:733904/1‑142 (MQ=21)                                                                                     gACGCATGAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc                                                  <  2:719855/143‑1 (MQ=255)                                                                                             agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa                                          <  1:172604/143‑1 (MQ=255)                                                                                                       tgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACCCGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGCGACCCACCTGACAAGAACAGTATCAACCAGTAAAAAACCCCGTaa                                >  2:211108/1‑143 (MQ=18)                                                                                                            aGGACGTCGCCGGGGTAAACGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGc                           <  2:786211/143‑1 (MQ=255)                                                                                                             ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACGCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCa                          <  1:959382/143‑1 (MQ=255)                                                                                                              gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAt                         >  1:803914/1‑143 (MQ=255)                                                                                                               aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTCAAAAACCCCGTAAACAGCAtt                        >  1:54028/1‑143 (MQ=255)                                                                                                                   tGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGcc                    >  1:519620/1‑143 (MQ=255)                                                                                                                      cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCACCCAGTAAAAAACCCCGTAAACAGCATTCGCCTGa                 >  2:1031622/1‑143 (MQ=255)                                                                                                                       gcgGTAAGAGGCGCAACCTTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAATTCTCAGTCAGAAGTGACTCACATGACAAAAACAGTATCAAACAGTAAAAAACCCCGTAAACAGCATTCGCCTGaa                <  2:322809/143‑1 (MQ=14)                                                                                                                         tgTAACAGTCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAtt              <  1:282635/142‑1 (MQ=255)                                                                                                                              cgggCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGAGACGCGGATAAGTGAGTAAACTATGAGACAGATGCGTATCACGTGGGTGATGCAGTATCAACCAGACAAAACCCCCGTAAACAGCATTCGCCTGAATTTCGCa         <  2:477639/141‑1 (MQ=2)                                                                                                                              cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa         <  1:468784/143‑1 (MQ=38)                                                                                                                              cAGGCGCAACCGTAATCTGAGCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa         <  1:85288/143‑1 (MQ=38)                                                                                                                                 agggacgcGTGATCTGATCTCACCCTGCACTAGCGGACACGCGGTGAAGGGAGTAAACTCTCAGTCAGATGCGACTCATATGACAAAAACAGTATCAAACAGGAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg      <  2:84113/136‑1 (MQ=11)                                                                                                                                    cAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAAAGCAGTCGCATGAATTTCGCAGTGAAg   >  2:399808/1‑143 (MQ=16)                                                                                                                                     aaCCGTTAACTGATCGTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTCACTCACATGACAAACACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc  <  2:857792/143‑1 (MQ=11)                                                                                                                                     aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCACTCGCCTGAATTTCGCAGTGAAg   <  1:290939/142‑1 (MQ=17)                                                                                                                                     aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCACTCGCCTGAATTTCGCAGTGAAg   >  2:290939/1‑142 (MQ=17)                                                                                                                                               |                                                                                                                                     CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGC  >  NC_000913/566635‑566909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.