| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1307070 = | 5 (0.090) | 17 (0.300) | 15/262 | NT | 77.3% | coding (81/330 nt) | yciU | DUF440 domain‑containing protein YciU |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
TTCTTCAGTCCGTTGCTGTAAAACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1307205‑1307070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAG < NC_000913/1979270‑1979132 TTCTTCAGTCCGTTGCTGTAAAACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACCATCGCCTGACTGAAGATGGAACGCTTGAACAGGCCTACGCTATTCTTCCCCACCTGGCCGCCGccgctc > 2:794684/1‑137TTCTTCAGTCCGTTGCTGTAAAACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATG < 1:89447/143‑1 TCCGTTGCTGTAAAACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAAC > 2:836360/1‑143 TGTAAAACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGAT < 1:640640/143‑1 TAAAACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACGGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACCAACTGActc > 2:376851/1‑140 AACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGT < 1:333258/143‑1 AACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGT < 1:836360/143‑1 CAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACCGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGACGCTGCCAACATACTGATGTAGCGTCTGAcg > 2:214399/1‑141 AGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGCTGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCA > 2:925459/1‑143 GCCTGACTGAAGATGAACCGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTC < 1:877886/143‑1 GCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTC < 1:1034414/143‑1 GACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGT > 2:196310/1‑143 ATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCCGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAC > 2:399604/1‑143 AACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGT < 1:994805/143‑1 CTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAAC > 1:803688/1‑143 ACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGG > 1:223417/1‑143 TTTTCTCGAACTGGCTGCCGGTGATGCTGCCAGCTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTGTCTATCAGCTGTCCCGCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGC < 1:103214/143‑1 TCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGC > 1:728067/1‑143 CTGCCGGTGATTCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCA < 1:581826/143‑1 TGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAAGGGCAAAAGCACCGCCGGACACCAG > 2:505983/1‑143 TTCTTCAGTCCGTTGCTGTAAAACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1307205‑1307070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAG < NC_000913/1979270‑1979132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |