| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1307070 = | 5 (0.090) | 17 (0.300) | 15/262 | NT | 77.3% | coding (81/330 nt) | yciU | DUF440 domain‑containing protein YciU |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
TCACCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGTTTTACAGCAACGGACTGAAGAA > NC_000913/1306928‑1307205 | tCACCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCg < 1:131981/143‑1 (MQ=255) ctggtgtccggcggtgcttttgcccttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCa > 2:505983‑M1/140‑143 (MQ=255) tgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagaatcaccGGCAg < 1:581826‑M1/5‑1 (MQ=255) gcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCga > 1:728067‑M1/130‑143 (MQ=255) aaaaGTCCGGGTTCAAATCGAAATCAACATGCTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAGTTCgaga < 1:781007/143‑1 (MQ=255) aaGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCGGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGATCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGAGCGAGATTGGCGGCAGCCAGTTGGAGaaa > 1:582890/1‑143 (MQ=255) gcttttgccgttacgcaccaccccgtcagtagctgaacaggcgggacagctgatagacacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagctggcagcatcaccGGCAGCCAGTTCGAGaaaa < 1:103214‑M1/19‑1 (MQ=255) agcccGGGTTCAAATCGAACTCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGCTCGAGATTGTCGGCAGCCAGTTCGAGaaaa < 2:674116/140‑1 (MQ=255) ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGt > 1:223417‑M1/118‑143 (MQ=255) gttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAg > 1:803688‑M1/116‑143 (MQ=255) tCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTg > 1:1063841/1‑143 (MQ=255) accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGtt < 1:994805‑M1/35‑1 (MQ=255) gtagctgaacaggagggacagctgatagaaacggaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCAt > 2:399604‑M1/97‑143 (MQ=255) gCCACTCCTCCGCCGCGTCGAATAACTCCGCGCCGCCGCGCTCGTCAACCTGAAGATTGAACACCAGAACATCGGCTGGATCGAGATTGTCGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTtca < 2:336899/143‑1 (MQ=255) acaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTtcagtc > 2:196310‑M1/89‑143 (MQ=255) gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGc < 1:1034414‑M1/59‑1 (MQ=255) gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGGTTCATCTTCAGTCAGGc < 1:877886‑M1/59‑1 (MQ=255) tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcagcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTtact > 2:925459‑M1/56‑143 (MQ=255) cgtcagacgctacatcagtatgttggcagcgtcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCGGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTg > 2:214399‑M1/37‑143 (MQ=255) actaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGtt < 1:836360‑M1/115‑1 (MQ=255) actaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGtt < 1:333258‑M1/115‑1 (MQ=255) gagtcagttggttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCCGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGTTTTa > 2:376851‑M1/26‑143 (MQ=255) atcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGTTTTACa < 1:640640‑M1/120‑1 (MQ=255) gttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGTTTTACAGCAACGGa > 2:836360‑M1/16‑143 (MQ=255) gagcggcGGCGGCCAGGTGGGGAAGAATAGCGTAGGCCTGTTCAAGCGTTCCATCTTCAGTCAGGCGATGGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGTTTTACAGCAACGGACTgaagaa > 2:794684‑M1/8‑143 (MQ=255) catcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGTTTTACAGCAACGGACTgaagaa < 1:89447‑M1/136‑1 (MQ=255) | TCACCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGTTTTACAGCAACGGACTGAAGAA > NC_000913/1306928‑1307205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |