New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	2 (0.040)	13 (0.240)	11/256	NT	93.1%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

AATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGT‑GAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTT  >  NC_000913/1299357‑1299636                                                                                                                                              |                                                                                                                                            aaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTAACCATCATGTTATTTTCGACAAATCATAATCCTGGGCTTCATGAAGAATAATTGAAATGATATTAATAATTCCACTGCCTTTGTAAGATGCAAGTGCTAAa                                                                                                                                            >  2:96841‑M1/1‑142 (MQ=255)                        tCCTTAACTGCTCCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATGCTACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattatt                                                                                                                     <  1:1053027‑M1/143‑25 (MQ=255)                          cTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTGTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                                                                                                   >  2:512100‑M1/1‑117 (MQ=255)                                tGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGACTCATTGACATGATATTATTAATTGAACGGCCTTTGGTATAGGAAAGTGCTAAatattaatcaattgttaaattattgtgcattt                                                                                                             >  2:958061‑M1/1‑111 (MQ=255)                                              atcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactg                                                                                               <  2:984028‑M1/143‑47 (MQ=255)                                                                             ggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaat                                                                <  2:936814‑M1/143‑78 (MQ=255)                                                                             ggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaat                                                                <  1:379728‑M1/143‑78 (MQ=255)                                                                                    tGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaaatgtaatcagaaaagatagacatccttagccaatctctaat                                                         >  2:766806‑M1/1‑59 (MQ=255)                                                                                                        attattAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtt                                     <  1:443945‑M1/143‑105 (MQ=255)                                                                                                              aactccaCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaa                               <  1:18654‑M1/140‑111 (MQ=255)                                                                                                              aaTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaa                               >  1:1006424‑M1/1‑33 (MQ=255)                                                                                                              aaTTCCACTGCCTGTGGTAGAGGAAAGTGTTAAataataatcaattgttaaatgattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaa                               <  2:838788‑M1/143‑111 (MQ=255)                                                                                                                          tttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcagggatgca                   >  1:406570‑M1/1‑21 (MQ=255)                                                                                                                               tAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaagggtggacgtgcacagccaaccgctatttgctggaatggaaagatgtttgttaaggcatggatgcaagcta              >  1:511954‑M1/1‑16 (MQ=255)                                                                                                                                     ttcgTGCGAAGGACGGTGGGAACAAGCCCCGGATATGAGCTCATGTTTGTCATCTGCAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGT‑GAATTCAGCAGTAAGCGCCGTCAGACCAGAAAtga       <  2:1060152/140‑1 (MQ=11)                                                                                                                                         tGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGAAAGTATAATTGAACTG‑AAGCGCCGTCAGACCGGAAAagagctg   >  1:749389/1‑140 (MQ=11)                                                                                                                                           cTAAgtaagaattaattgttaaattattgtgtatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaatttaaagatgtttgttaaggcatggatgcaagctatagattctgata  <  2:495666‑M1/143‑140 (MQ=255)                                                                                                                                              |                                                                                                                                            AATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGT‑GAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTT  >  NC_000913/1299357‑1299636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.