New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	2 (0.040)	13 (0.240)	11/256	NT	93.1%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

GATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATA  >  NC_000913/1300556‑1300836                                                                                                                                               |                                                                                                                                           aattacagttagttataaggatttccttaactgcttctcctaaccatcatgttattttcgacaaatcataatcctgggcttcatgaagaataattgaaatgatattaataattccactgcctttgtaagatgcaagtgctaaa                                                                                                                                            >  2:96841‑M2/143‑143 (MQ=255)                        tccttaactgctcctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaatgctactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAattatt                                                                                                                     <  1:1053027‑M2/24‑1 (MQ=255)                          cttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattgttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtgt                                                                                                                   >  2:512100‑M2/118‑143 (MQ=255)                                tgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagactcattgacatgatattattaattgaacggcctttggtataggaaagtgctaaATATTAATCAATTGTTAAATTATTGTGCAttt                                                                                                             >  2:958061‑M2/112‑143 (MQ=255)                                              atcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTg                                                                                               <  2:984028‑M2/46‑1 (MQ=255)                                                                             ggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAAt                                                                <  1:379728‑M2/77‑1 (MQ=255)                                                                             ggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAAt                                                                <  2:936814‑M2/77‑1 (MQ=255)                                                                                    tgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAAATGTAATCAGAAAAGATAGACATCCTTAGCCAATCTctaat                                                         >  2:766806‑M2/60‑141 (MQ=255)                                                                                                        attattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgtt                                     <  1:443945‑M2/104‑1 (MQ=255)                                                                                                              aattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTaa                               >  1:1006424‑M2/34‑143 (MQ=255)                                                                                                              aattccactgcctgtggtagaggaaagtgttaaATAATAATCAATTGTTAAATGATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTaa                               <  2:838788‑M2/110‑1 (MQ=255)                                                                                                              aactccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTaa                               <  1:18654‑M2/110‑1 (MQ=255)                                                                                                                          tttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCAGGGATGCa                   >  1:406570‑M2/22‑143 (MQ=255)                                                                                                                               tagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAGGGTGGACGTGCACAGCCAACCGCTATTTGCTGGAATGGAAAGATGTTTGTTAAGGCATGGATGCAAGCta              >  1:511954‑M2/17‑143 (MQ=255)                                                                                                                                           ctaaGTAAGAATTAATTGTTAAATTATTGTGTATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTTAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATa  <  2:495666‑M2/139‑1 (MQ=255)                                                                                                                                               |                                                                                                                                           GATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATA  >  NC_000913/1300556‑1300836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.