New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2304842 =	NA (NA)	4 (0.070)	3/250	NT	NA	noncoding (32/36 nt)	other	REP161h
	?	NC_000913	= 2347239	NA (NA)					noncoding (2/36 nt)	other	REP164b

GACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGC  >  NC_000913/2304706‑2304936                                                                                                                                         |                                                                                               gACGCTGGCGCGTCTTATCAGGACTACACCGCTGTGAAGTGCTACACCCCGTAAGTTGGATAAGGCGGCTACGCCGCAACCGACATCTAACGTCCGAGACGGTTGGCTGATGGGACGCTCGCGCGACATACCAGGCCAACAcc                                                                                          >  2:28619/1‑143 (MQ=11)      gggCGCGTCTTATCAGGCCTACACCGCTGGGAAGCGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCtgt                                                                                     <  1:784555/142‑1 (MQ=255)                  tCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCGTGATGCGACGCTGGCGCGTCTTATCAGGCCTCCACCCCTGCGACGTGCCCCAc                                                                         >  1:555417/1‑143 (MQ=14)                    aGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTACACCGCTGTGACGCGCTCCAccc                                                                       >  2:305596/1‑143 (MQ=255)                                   tgAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTGCACCGCTGGGGACTGCCCCACCCCGTAGGTCGGATCAg                                                        >  1:409568/1‑143 (MQ=14)                                     aaGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGGTCCACCCCGTACGTCGGATAAGGc                                                      >  2:107365/1‑143 (MQ=255)                                     aaGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCCCTGTGGAGTGCGCCACCCCCTAGGTCGGCTAAGGc                                                      >  1:184392/1‑143 (MQ=14)                                      aGTGCTCCACCCCGTAGGTTGGAGAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCTCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCg                                                     <  1:470329/143‑1 (MQ=255)                                       gTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCgg                                                    <  1:639114/143‑1 (MQ=255)                                             cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGTCGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGGAGTGCTCCACCCCGTAGCTCGGATAAGGCGGGTAcgc                                              >  1:238758/1‑143 (MQ=255)                                             cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAGGTGGCAAACCCCGTGGGGGGGAGAAGACGGtggccg                                              >  2:122390/1‑138 (MQ=14)                                              aCCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGGAGTGCTCCACCCCCTAGGTCGGCTCCGGCGGTCAcgcc                                             >  1:165996/1‑143 (MQ=14)                                                  cttAGTTTGGATAGTGCGTTTACGCCGCACCCGACATCCAACGGCCGACCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCAt                                         <  1:439055/141‑1 (MQ=11)                                                    tAGGTCGCATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATcc                                       <  1:193341/143‑1 (MQ=255)                                                       gTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGACGGGTACGCCGCATCCGAc                                    >  1:894704/1‑143 (MQ=255)                                                        ttGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACa                                   >  1:117899/1‑143 (MQ=40)                                                                 gCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGCGACGTGCTCCACCCCGTAGGGCGGATAAGGCGGGTACGCCGCATCCGACATCCAACGcc                          >  2:813300/1‑143 (MQ=11)                                                                      ctcgccccTTCCGACAGCCATCGTCCGTGCCGGTTGCCTGGTGCGCCGCTGGCGCGTCTTATCAGGTCGACACCGCTGTGAAGTGCTCCGCCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGc                     <  2:592761/141‑1 (MQ=11)                                                                         gccgcATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCgg                  <  1:859273/143‑1 (MQ=32)                                                                         gccgcATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCATATCAGGCCGACACCGCTGTGAAGTGCTACACCCCGTAGGTCCGATCATGCGGTTACGGCGCATACGACATCCAACGCCCAAGGCgg                  >  2:32059/1‑143 (MQ=11)                                                                                 cGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCa                                                                          <  1:190470/79‑1 (MQ=34)                                                                                 cGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGCCATCTAACGCCCCAGCCGGTTCCCTGa          >  1:813297/1‑143 (MQ=12)                                                                                  gACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTCCACCGCTCTGAAGTGCTCCACCCCGTAGGTCGGATCAGGCGGTCACGCCGCATCCACCATCTAACGCCCAAGCCGGGTGCCCGAt         >  2:22996/1‑143 (MQ=11)                                                                                  gACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTACACCGCTGTGACGTGCTCCACCCCGTACGTCGGATAAGGCCGTTACGCCCCACCCCACATCTCACGCCCCACCCCGCTGCCTCAt         >  2:35961/1‑143 (MQ=11)                                                                                        cAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGCAGGTCGGATAAGGCGGATACGCCGCACCCCACCTCTAACCCCCAAGCCGGCCGCCCGACGCGCCg   >  2:160863/1‑143 (MQ=11)                                                                                         aaCGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGGCATCTAACGCCCGAGCCGGTTGCCTGATGCGACGc  >  1:35082/1‑143 (MQ=17)                                                                                                                                         |                                                                                               GACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGC  >  NC_000913/2304706‑2304936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.