New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2304842 =	NA (NA)	4 (0.070)	3/250	NT	NA	noncoding (32/36 nt)	other	REP161h
	?	NC_000913	= 2347239	NA (NA)					noncoding (2/36 nt)	other	REP164b

CTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACA  >  NC_000913/2347097‑2347380                                                                                                                                               |                                                                                                                                              cTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGCCGCGCCAGCGTCGCAGCAGGC                                                                                                                                               <  2:201715‑M2/143‑1 (MQ=255) cTGGTGCAGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCCGCGTCGCATCAGGC                                                                                                                                               <  2:737216‑M2/143‑1 (MQ=255)      gCCGTCAATCCAGGACGAAGGCTGCGAAGGCGGGGTGTGTCCTCACCAATATTGAGATGCCGGATGCGGCGTAACCGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCgg                                                                                                                                          <  1:801483/143‑1 (MQ=18)       ccGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCggg                                                                                                                                         >  1:586202/1‑143 (MQ=255)           cAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGAGATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGcc                                                                                                                                     <  1:170293/143‑1 (MQ=255)                cAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATg                                                                                                                                <  2:798287/143‑1 (MQ=255)                  ggACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCa                                                                                                                              >  1:976611/1‑143 (MQ=255)                          gCTGCGATGGCGTCACAGTTAAGTTCGGATCTTGATACGCTGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACTCGCCACCGTCTCAAAAGGTTCCGGGTGCTGAATGCAGTGTGAAc                                                                                                                      <  2:968124/143‑1 (MQ=12)                            tGCGAAAGCGGCGCATGTAAGATCTGCTATTGAGATGCCCGATGCGCCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCCCCCGCGTCACATCCCGCGCCCGCTGCCCCCTGCAGCGCGacccc                                                                                                                    >  2:301232/1‑139 (MQ=18)                                    cggcgCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTGGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCg                                                                                                            <  1:321029/143‑1 (MQ=255)                                      gcgcATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGc                                                                                                          <  2:275423/143‑1 (MQ=255)                                      gcgcATGTAAGATCTGATATTGAGATGCCGGATGCGGCGAAAACGCCTTATGCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGc                                                                                                          >  1:759146/1‑143 (MQ=255)                                         cacgTAAGATCCTATCTTCCGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTa                                                                                                       <  1:390047/140‑1 (MQ=25)                                         cATGTAAGATCGGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTa                                                                                                       <  1:552711/143‑1 (MQ=255)                                            gTAAGAGCGGATAGTGAGAGGCCGGGTGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACgg                                                                                                    <  2:27236/143‑1 (MQ=25)                                             tAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGc                                                                                                   >  1:1077090/1‑143 (MQ=255)                                                gaggtGATATGGAGAGGCGGGACGCGGCGTAAACGCGTTATCCGGCCTACGGCTCGGGTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCg                                                                                                <  1:298243/139‑1 (MQ=25)                                                   cTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGAGCCAGCGTCCCAGCAGGCTCCGGGTTCCGGGAGCAGCGTGCACCGCGTATCCAGCCGGCCGCTCggca                                                                                             >  2:743838/1‑141 (MQ=18)                                                    tagtatTGAGATGCCGGATGCGGCGGAAACGCCTTATCCGGCCGACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGAtt                                                                                            <  2:211266/140‑1 (MQ=255)                                                    tGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGAtt                                                                                            <  1:424212/143‑1 (MQ=255)                                                       tatTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAGGACGCGCCAGCGGCGCATCAGGCTCCCGGTGCCGGATGCAGCGGGAACGCCGTATCCTGCCTCCGGCCCGGGTTTgg                                                                                         >  1:593703/1‑142 (MQ=21)                                                         ttGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTCCGGCTCGGAGTTGTAg                                                                                       >  2:1095031/1‑143 (MQ=255)                                                         gtGAGAGGCCTCAGGCGGCGTACGCGCCGTGTCGGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGGCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAg                                                                                       <  2:529547/142‑1 (MQ=25)                                                          tGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAgg                                                                                      <  1:905404/143‑1 (MQ=255)                                                          tGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAgg                                                                                      <  1:228594/143‑1 (MQ=255)                                                             gagggcGGAGGCGGCGTAGATGCTTTATCCGGCCTACGGCTCGGTTGGTAGGGCTGAGAAGGCGCGCCAGCGGCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCt                                                                                   <  2:747240/138‑1 (MQ=25)                                                             gagggcGGAGGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCt                                                                                   <  2:87392/138‑1 (MQ=255)                                                                 ccGGGTGGGGCGGAAAGGCCTGATCGGGCCTACGGCTCGGTGTGTAGGCCTGAGAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATa                                                                               <  2:362006/143‑1 (MQ=25)                                                                     aTGCGGCGTAAACGCCTTAGCCGGCCGACGGCTCGGTTTGGAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGAc                                                                           <  1:173641/143‑1 (MQ=255)                                                                         ggcgTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGGCTACGGCTCGGATTTGTAGGCCTGATGAGACgcgc                                                                       >  1:228387/1‑143 (MQ=255)                                                                          gcgTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGcc                                                                      >  1:529391/1‑143 (MQ=255)                                                                           cgTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGCTGCAGGGTGCACGCCGTATCCGGCCTACGGCTCGGGTTTGTCGGGCTGATAAGACGCGCCa                                                                     >  1:975214/1‑143 (MQ=25)                                                                             tAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTCCGGCTCGGATTTGTACGCCTGATAAACCGCGcctac                                                                   >  2:758019/1‑140 (MQ=37)                                                                                    cTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCAt                                                            >  1:588147/1‑143 (MQ=255)                                                                                       aTCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAg                                                         >  1:1001152/1‑143 (MQ=255)                                                                                        tCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAgg                                                        <  1:435393/143‑1 (MQ=255)                                                                                           ggCCTACGGCTCGGATTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGcac                                                     <  1:489306/143‑1 (MQ=255)                                                                                                          gtGTAGGCCTGAGAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTaaa                                      <  2:320547/142‑1 (MQ=255)                                                                                                             tAGGCCGGATAGGACGCGCCAGCGTCGCATCAGGCGCCGGGGGCCGGATGCAGCGTGAACGCCTTAGCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTaaatgc                                   <  2:13392/143‑4 (MQ=25)                                                                                                              aGGCCGGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGc                                  <  2:714497/143‑1 (MQ=255)                                                                                                               ggCCTGACAAGACGCGCCAGCGTCGCATCAGGCTCCGGCTGCCGGATGCAGCGTGTACGCCTTATCCGGCCTACGGCGCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGcc                                 <  2:136611/143‑1 (MQ=255)                                                                                                                 ccTGATAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggtcggataaggcggttacgccgcatccgacatctaacgcccaagccggttgc                                                            <  1:466889‑M2/114‑84 (MQ=255)                                                                                                                 ccTGATAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggtcggataaggcggttacgccgcatccgacatctaacgcccaagccggttgc                                                            >  2:466889‑M2/1‑31 (MQ=255)                                                                                                                     aTAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATcc                           >  1:411364/1‑143 (MQ=255)                                                                                                                        aGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGc                        >  1:259163/1‑143 (MQ=255)                                                                                                                          aCGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCAt                      <  2:453347/143‑1 (MQ=255)                                                                                                                            gcgcCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCCTCAGGCACCAGATGCGGCGCAAAATTCCTTATCCGCCATTa                    >  2:847691/1‑143 (MQ=25)                                                                                                                              gcCCGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTaaa                  <  2:759146/143‑1 (MQ=255)                                                                                                                                cggcgcCGGATCGGGCTCCGGGTGCCGGATGCAGCGTGAACGCCGTAGCCGGCCTACGGCTCGGATTTGTAGGCCTGCTAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACt                <  2:216308/141‑1 (MQ=25)                                                                                                                                cAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCAGTAAACt                >  1:403270/1‑143 (MQ=255)                                                                                                                                cAGAGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACt                <  2:161560/143‑1 (MQ=255)                                                                                                                                 cgcGTCACATCAGGGctacaccgctgtgaagtgctccaccccgtaggtcggataaggcggttacgccgcatccgacatctaacgcccaagccggttgcctgatgcgacgctggcgcgtcttatcaggcctacaccgctgtgaa               >  1:656907‑M2/2‑15 (MQ=255)                                                                                                                                  gCGTCTCCTCACGCctacaccgctgtcaggtgctccaccccgtaggtcggataaggcggttacgccgcatccgacatctaacgcccaagccggttgaagaatcgggcgcggtcgcgtcttatcaggcctacaccgctgtgaag              >  2:238758‑M2/1‑14 (MQ=255)                                                                                                                                         aTCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAgg       <  2:846298/143‑1 (MQ=255)                                                                                                                                          tccggCTCCGGGTGCCGGATGCAGCGTGAACGTCTCAGCCGTCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGa      <  2:228387/140‑1 (MQ=37)                                                                                                                                          tCAGGCctacaccgctgtgaagtgttccaccccgtaggtcggataaggcggttacgccgcatccgacatctaacgcccaagccggttgcctgatgcgacgctggcgcgtattatcctgcctacaccgctgtgacgtgctcccc      <  1:461042‑M2/143‑138 (MQ=255)                                                                                                                                            aGGCGCCGGGTGCCGGAGGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGaca    <  1:134251/143‑1 (MQ=255)                                                                                                                                              gCctacaccgctgtgaagtgctccaccccgtaggtcggataagg                                                                                                     <  1:994854‑M2/44‑43 (MQ=255)                                                                                                                                              gCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCACCAGGacacc  >  1:778291/1‑142 (MQ=255)                                                                                                                                               |                                                                                                                                              CTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACA  >  NC_000913/2347097‑2347380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.