New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3110402 =	58 (1.030)	3 (0.060)	3/250	NT	5.4%	noncoding (37/76 nt)	pheV	tRNA‑Phe
	?	NC_000913	= 4362593	51 (0.960)					noncoding (34/76 nt)	pheU	tRNA‑Phe

ACAATGCGTGCAATATCGGCAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG  >  NC_000913/3110260‑3110544                                                                                                                                               |                                                                                                                                               ccAATGCGTGCAATATCGGCAAAGTGATGATAGATGGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGaaa                                                                                                                                                <  1:381876/142‑1 (MQ=255) aCAATGCGTGCAATATCGACAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGAAAGCTGAGTCGGTAGAGCAGGGGACTGaaa                                                                                                                                                >  2:96265/1‑143 (MQ=255)  tggttgtgttcgggagaattgatttggaggcagaacgcttaaatcgtggcgtcctgaaacgaaaaacggacctccgtggaggtccgtttatatgaatttggtgcccggactcggaatcgaaccaaggacacggggattttcaa                                                                                                                                               >  2:998190‑M1/142‑143 (MQ=255)    ctttacttcggtagaaatgatttctacgcagaacgcttaaatcctggcgtcctgaaacgaaaaacgcacctccgtgaacgtccgtttatatgaatttgtttcccggactcggaatcgaaccaaggacacggggattttcAATc                                                                                                                                             >  2:154396‑M1/140‑143 (MQ=255)    aTGCGTGCAATATCGGCAAAGTGATGATAGATTGAGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATc                                                                                                                                             >  1:287035/1‑143 (MQ=255)       gagttcgttagaattgatttgtgtgcagcacgcttaaatcgtggcgtcctgaaacgaaacacggacctccgtggaggtccgtttatatgaatttggtgcccggactcggaatcgaaccaaggacacggggattttcAATcccc                                                                                                                                          >  1:268699‑M1/137‑143 (MQ=255)        gTGCAATATCGGCAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTGGGTAGAGCAGGGGAGTGAAAAACCCCg                                                                                                                                         >  2:661382/1‑143 (MQ=255)        gTGCAATATCGGCAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATGAAAAATCCCCg                                                                                                                                         >  2:920479/1‑143 (MQ=255)               atCGGCAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGCTCGAGAATCCCCGGGTCCtt                                                                                                                                  >  2:819745/1‑143 (MQ=255)                 cGGCAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTgg                                                                                                                                >  1:742523/1‑143 (MQ=255)                  ggCAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGt                                                                                                                               >  1:169609/1‑143 (MQ=255)                   gCAAAGGCATGTTCGATTGTGCAGTCTGCAGTAAGTGGAAGAAACTTGACTGACGAGACGAGGCGACTCAGGGTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGtt                                                                                                                              <  2:742265/143‑1 (MQ=18)                       aGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGAt                                                                                                                          >  2:244926/1‑143 (MQ=255)                        gTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACTAGGCGAATCAGGTTTAATGCGCCCCGGTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGAtt                                                                                                                         <  1:391429/143‑1 (MQ=255)                         tgatgaTAGATCGTGCAGTGTGCGGTAAATTGAAGAAATTTGTTTGGCGAGACGAGGCGAGTCAGGTTTAATGCGCCCCGTGGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTc                                                                                                                        <  2:623812/143‑1 (MQ=21)                          gatgatAGGTTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTcc                                                                                                                       <  1:975323/143‑1 (MQ=255)                            tgatGGATTGTGCAGTCTGCAGTAAATTGAAGAAATGTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAACCCCCGTGTCCTTGGTTCGATTCCGa                                                                                                                     <  2:865027/143‑1 (MQ=255)                             gatAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAg                                                                                                                    >  2:406903/1‑143 (MQ=255)                              atAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGt                                                                                                                   >  1:891752/1‑143 (MQ=255)                               tAGATTGTGCAGTCTGCAGTAAATTCAAGAAATTCGATTGAGGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAAGCCCCGTGTCCTTGGTTCGATTCCGAGTc                                                                                                                  <  2:309906/143‑1 (MQ=255)                                 gactgtgCAGTCCGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCg                                                                                                                <  1:941996/140‑1 (MQ=255)                                 gATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCCGTCGGTAGAACAGGCGAGTGAAAATCCCCGTGTCCTTGGTTCGCATCCGAGTCCg                                                                                                                >  2:810594/1‑143 (MQ=25)                                 gATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCAGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGCGTCCg                                                                                                                >  2:177380/1‑143 (MQ=255)                                   ttGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCggg                                                                                                              <  1:189464/143‑1 (MQ=255)                                        ccgTCTGCTGTAAATTGAAAAGATTTGATTGACGAGACGAGGCGAATCATGTTTAATGCGCCTCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGcacca                                                                                                         <  1:555641/141‑1 (MQ=18)                                        cAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGcacca                                                                                                         >  1:501541/1‑143 (MQ=255)                                        cAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTCGGTCGAATCCGAGTCCAGGcccca                                                                                                         >  2:75933/1‑143 (MQ=21)                                         aGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGcaccac                                                                                                        >  1:76739/1‑143 (MQ=255)                                          gTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCCGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACt                                                                                                       >  2:181660/1‑143 (MQ=255)                                          gTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGATAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACt                                                                                                       >  2:545499/1‑143 (MQ=255)                                           tCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTa                                                                                                      >  1:821209/1‑143 (MQ=255)                                               cAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTc                                                                                                  >  1:532994/1‑143 (MQ=255)                                                   aaaTTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTaa                                                                                              <  1:880380/143‑1 (MQ=255)                                                     aTTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAGTCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAGTTCTTAAGa                                                                                            >  1:678817/1‑143 (MQ=255)                                                      ttGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGaa                                                                                           <  1:244926/143‑1 (MQ=255)                                                        gaagaaATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAAcc                                                                                         <  1:951232/143‑1 (MQ=255)                                                         aagaaATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAAccc                                                                                        >  1:613497/1‑143 (MQ=255)                                                              aTTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCca                                                                                   >  1:588750/1‑143 (MQ=255)                                                                  gattgaCGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAg                                                                               >  1:143644/1‑143 (MQ=255)                                                                   gttgaCGAGACGAGGCGAATCAGGTGTGATGCGCCGTGGTGCCGGGATAGCTCGGTCGGTAGTGCAGGGGATTGACAGTCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGATCCCGCCCACAAgg                                                                              <  2:1070662/142‑1 (MQ=21)                                                                       acgagacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGCTTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCggg                                                                          >  1:386676/1‑143 (MQ=255)                                                                         gagacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTACGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGtt                                                                        <  1:577146/143‑1 (MQ=255)                                                                          agacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGttt                                                                       <  1:762442/143‑1 (MQ=255)                                                                          aaacgagGCGAGTCAGGCTTGACGCTCCCCGTTGCCCGGATAGCTCAGACGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGttt                                                                       <  1:456552/141‑1 (MQ=18)                                                                           gacgagGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGtttt                                                                      <  1:658430/143‑1 (MQ=255)                                                                            accagGCGAATCAGGTTTAATGCGCTCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGttttt                                                                     <  1:531179/140‑1 (MQ=255)                                                                                        aGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAACTCTTAAGAACACGCCCACAAGGCGGGTTTTTGCGTCTGAATCt                                                         >  2:152492/1‑143 (MQ=18)                                                                                           tttAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGCTTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAACTCTTAAGACCCCGCCCACACGCCGGCACTTCGCTTTTGCATCCGAc                                                      >  2:153118/1‑143 (MQ=14)                                                                                           tttAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTGGGTTCGAGTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACACGGCGGGTTTTTGCTTTTGGATCTGAc                                                      >  2:726649/1‑143 (MQ=255)                                                                                                 gcgcCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGCAAGGATTTCCTGGGGTCCTTGGTTCGATGCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAAc                                                <  1:207456/143‑1 (MQ=25)                                                                                                  cgcCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAAcc                                               >  1:849078/1‑143 (MQ=255)                                                                                                    ccccGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGCACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCtt                                             >  1:443473/1‑143 (MQ=255)                                                                                                     cccGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTc                                            >  1:66104/1‑143 (MQ=255)                                                                                                          tGCGCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAACTCCCCGTGTCCTTGGTTCGCTTCCGAGTCCGGGCACCACTAATGCTTAAGAACCCGCCCACGAGGCTGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGaa                                       <  2:805605/143‑1 (MQ=25)                                                                                                             ccGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGaaaaa                                    <  2:588750/143‑1 (MQ=255)                                                                                                              cGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGaaaaaa                                   >  1:618700/1‑143 (MQ=255)                                                                                                                gATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGCACCCGCCCACAACGCGGGTTTTTGCTTTTGGATCTGACACTAACCTTCACGAAAAAAAt                                 >  2:129452/1‑143 (MQ=255)                                                                                                                  tcgCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGGCCTTGGTCCGATTCCGAATCCGGGCACCACTAAGTCTTAAGAGCCCGCCCACGAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTa                               <  2:1085552/141‑1 (MQ=25)                                                                                                                    aatcgaaccaaggacacggggattttcAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCgg                                                                           <  1:745469‑M1/70‑1 (MQ=255)                                                                                                                    aatcgaaccaaggacacggggattttcAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCgg                                                                           >  2:745469‑M1/28‑97 (MQ=255)                                                                                                                           cgctaaagcagcGGATTGAAAATCCCCGTGTCCTTGGTCCGATTCCGAGTCCGGGCACCACTAATTCTCAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGCCAATAACCTTCACGAAAAAAATTAGCTTATaaa                      <  1:178367/137‑1 (MQ=38)                                                                                                                             gTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTATTTGCTTTTGGATCTGACACTAACCTTCACGAGAAAAATTAGCTACTAAAGt                    >  2:164883/1‑143 (MQ=37)                                                                                                                                gagCAGGGGATTGAAAATCCCCGTGGCCGTGGTGCGAGTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATGAGCTTAGAAAGTCTg                 >  1:1107992/1‑143 (MQ=38)                                                                                                                                   cAGGGGATTGAAATGCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTgggg              <  1:273335/143‑1 (MQ=255)                                                                                                                                   cAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTGAAGTGCGCGCCCACACGGCGGGCTTTTGCCTTTGGCTCTGACAACAACCTTCAAGAAAAAAATTAGCTTATAAAGTCTggcg              >  2:729565/1‑141 (MQ=25)                                                                                                                                   acggggattttcAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAACTGATAAAGTCTgggg              <  2:417024‑M1/131‑1 (MQ=255)                                                                                                                                        gATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAAtt         >  2:735267/1‑143 (MQ=255)                                                                                                                                          ttGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTCTGGATCTGACAATAACCTTCACGAAAACAATTAGCTTATAAAGTCTGGGGGAATTAc       >  2:454582/1‑143 (MQ=255)                                                                                                                                           tGAAAGTCCGCGGGTCCTTGGGTCTATTCCGCGTCCGGGCACCACTACTTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTAct      <  2:420368/143‑1 (MQ=255)                                                                                                                                            gAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAACCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGACAAAAATTAGCTTATAAAGTCTGCGGGCATTActc     >  2:786987/1‑143 (MQ=38)                                                                                                                                              aaaTCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACtctc   <  1:652142/143‑1 (MQ=255)                                                                                                                                               AATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATACAGTCTGGGGGCATTCCTCTCg  <  1:541955‑M1/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                               ACAATGCGTGCAATATCGGCAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG  >  NC_000913/3110260‑3110544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.