New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3549918 =	41 (0.730)	3 (0.060)	3/246	NT	7.4%	coding (153/2085 nt)	malQ	4‑alpha‑glucanotransferase
	?	NC_000913	3549940 =	37 (0.700)					coding (131/2085 nt)	malQ	4‑alpha‑glucanotransferase

GAACGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACG  >  NC_000913/3549777‑3550058                                                                                                                                              |                                                                                                                                             gAACGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTa                                                                                                                                             >  2:365019/1‑143 (MQ=255)   gaagctcgatggaaagcaaacgtctggataatgccgcgctggcggcggggattagccccaattacatcaatgcccacggtaaaccgcagtcgattagcgccgaaaccaaacggggtttgcttgacgcgatgcatcaacgTAcc                                                                                                                                           <  1:186677‑M1/4‑1 (MQ=255)   aCGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTAcc                                                                                                                                           <  1:731731/143‑1 (MQ=255)        tcgatggaaagcaaacgtctggataatgccgcgctggcggcggggattagccccaattacatcaatgcccacggtaaaccgcagtcgattagcgccgaaaccaaacggcgtttgcttgacgcgatgcatcaacgTACCGCCAc                                                                                                                                      >  1:326412‑M1/135‑143 (MQ=255)             ccccGTTACATGGCCTTTGTACTGCGTTCCTTCTGCGGTGGTCAGCAGCCAGCCATATTGGCCGCTGCCCCCCACCGCCATCGGCATTTTTTTGCCGCTGGTCTACACCATGACATCGGCGACTGTCGTTACCGGCACtctcc                                                                                                                                 >  2:705429/1‑142 (MQ=255)              cccGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGt                                                                                                                                >  2:463147/1‑143 (MQ=255)              cccGGTACATGGCCTTTGTAATGCGTTCCTTCTTCGGTTGTCAGCAGCCATTTATATTCGTCTCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGt                                                                                                                                <  1:974696/143‑1 (MQ=255)                      aTGGCCTGTGTACGTCGTCCCTCCTGCGGTGGTCAGCAGCCAGCTATCTCCGCCGCTGCCCTCCCCCACCATCGGCATTTTTGTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTAc                                                                                                                        <  1:301224/143‑1 (MQ=255)                        ggCCTTTGTACTGCGTTCCTTCTTCGGGGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGt                                                                                                                      <  1:846372/143‑1 (MQ=255)                          ccTTTGTACTGCGTTCCTTCTTCGGTAGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAACCCATAACATTCCGGCCGAGCATTACCGCCACTATCGTTGCGCTACGTTg                                                                                                                    >  2:439788/1‑143 (MQ=255)                           gcgtGTACTGCGGTCCTTCTTCGGGGCTCAGCACCCGGCTATGCTCGCCGCTGCCCTCCACCGCCATCGGCATTTTTTTGCCGCTGGTATAAACCATGGCAGTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGa                                                                                                                   <  2:718518/140‑1 (MQ=255)                            tttGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATGGGCATTTTTTTGCAGCTGGTAAAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTAGCGGTACGTTGAt                                                                                                                  >  2:956823/1‑143 (MQ=255)                             ttGTACTGCGTTCCTTCTTCGGTGGTCCGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCCGGACTGGCGTTACCGCCACTTTCCTGGCGTTACTGTGATg                                                                                                                 >  2:689667/1‑143 (MQ=255)                             tgggaCTGCGTGCCTTCTGCGGGGGTCAGCAGCCAGCTATATTCGCCGCTGCCCGCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATg                                                                                                                 <  1:402185/139‑1 (MQ=255)                              cgtccTGCGTCCCGGCTTCGGTGGCCAGCACCCCGCTCTATTCGCCGCGGCCCTCCACCACCGTCGGCATTTTTGTGCCGCTGGTATAAACCATGACCTTCGGGACTGGCGTCGCCGCCCCTTTCGTGGCGGTACGTTGGTGc                                                                                                                <  2:741139/139‑1 (MQ=255)                                 aCTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGCCTGGCGTTACCGCCACCTTCGCGCCGGTACGTTGCTGCATc                                                                                                             >  2:718254/1‑143 (MQ=255)                                      gctcccccttcGGTGGTGAGCAGCCAGCTATATCCGCCGCTGCCCTCCTCGACCAGCGGCATTGTCTTGACGCCGTTATAACTCATGCCCGGCGGGACTGGCGTTACCGCCACGTTCGGGGCGGTACGTCGATGCATCGCGTc                                                                                                        <  2:235520/136‑1 (MQ=255)                                      cttgtggcggcggggcttagccccaattacatcgattccctcggtacaccgcagtcgattagcgccgagaccaagcggcgtttgcttgacgtgatgcatcaacgTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTc                                                                                                        >  2:169044‑M1/105‑143 (MQ=255)                                            tcttcGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACCTTCGGGACTGGCGTTACCGCCACCTTCGGGGCGGTACGTTGATGCCTCGAGtaacgcca                                                                                                  >  2:118218/1‑136 (MQ=255)                                                       cagcagCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGGCAAGCAAACGCCGTTTgg                                                                                       >  1:710700/1‑143 (MQ=255)                                                       cagcagCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGCCAAGCAAACGCCGTTTgg                                                                                       >  1:815278/1‑143 (MQ=255)                                                         gcagcCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCCCTTTCGTGGCGGTACGTTGCTGCATGGCGTGGAGCAAACGCGGTGTGGtg                                                                                     >  1:73875/1‑142 (MQ=255)                                                         gcagcCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGtt                                                                                     >  2:39205/1‑143 (MQ=255)                                                              cagcTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAACCGCCGTTTGGTTTCGgc                                                                                >  1:933126/1‑143 (MQ=255)                                                                    atcaatgcccacggtaaaccgcagtcgattagcgccgaaaccaaacggcgtttgcttgacgcgatgcatcaacgTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCa                                                                                                   >  2:625162‑M1/75‑118 (MQ=255)                                                                    atcaatgcccacggtaaaccgcagtcgattagcgccgaaaccaaacggcgtttgcttgacgcgatgcatcaacgTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCa                                                                                                   <  1:625162‑M1/44‑1 (MQ=255)                                                                     atTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTCACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATc                                                                         <  2:1055832/143‑1 (MQ=255)                                                                      ttCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTGGGCGCTAATCg                                                                        >  1:223915/1‑143 (MQ=255)                                                                         gccgcTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTTATGCATCGCCTCAAGCAAACGCCGTTTGGTTTCGGCCCTAACCGACt                                                                     >  2:530709/1‑143 (MQ=255)                                                                         gccgcTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCACGCAAACGCCGTCTGATCTCGGCGCCACTCGACt                                                                     >  2:1051851/1‑143 (MQ=255)                                                                         gccgcTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCCAACGCCGTTTGGTTTCGGCGCTAATCGACt                                                                     >  1:22728/1‑143 (MQ=255)                                                                         gccgcTCCCCTCCACCCTCCGGGGCATTGTTTTGCCGCCGGTACAAGCCATGACATTCGGGACTGGCGTTACCGCCGCTTTCGTGGCGGTACGTTGATGCAGCGCGTCAAGCAAACGCCGTTTGGTTGCGGCGCTAATCGACt                                                                     <  2:930823/143‑1 (MQ=255)                                                                            gcTGCCCTCCACCACCATCGGCATTTATTTGCCGCTGGTCTAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCCAGCAAACGCCGTACGGCTCCGCCGCTACGCGACTGCg                                                                  >  2:478254/1‑143 (MQ=255)                                                                             ccgCCCTCCACCCCCACCTGCATTTTTTGGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTGCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCgg                                                                 <  1:445824/141‑1 (MQ=255)                                                                                 ccTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGTCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGGTGCGGCGCTAGTCCGCTGCGGttca                                                             >  2:681251/1‑141 (MQ=255)                                                                                 ccTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTGATCGACTGCGGTTTa                                                             >  1:1789/1‑143 (MQ=255)                                                                                        caccaTCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTTCGTTGATGCATCGCGTCAAGCAAACGCCGCTTGGTTTCGGCGCTAATTGACTGCGGGTGACCGgggg                                                      >  2:763006/1‑143 (MQ=255)                                                                                        caccaTCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGAGGCATCGCGTCAAGCTAACGTGGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTggg                                                      >  1:691091/1‑143 (MQ=255)                                                                                           caTCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAGCGCCGTTTGGTTTCGGCGCTGATCGCCTGCGGTTTACGGTGGGcgt                                                   >  2:410377/1‑141 (MQ=255)                                                                                               ggCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGAt                                               <  1:332517/143‑1 (MQ=255)                                                                                                gCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAAGCGACTGCGGTTTACCGTGGGCATTGagg                                              >  1:229895/1‑141 (MQ=255)                                                                                                   tttttttGCCGCTGGTATAAACCCTGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTaa                                           <  1:1039331/143‑1 (MQ=255)                                                                                                        ttGCCGCTGGTATAACGGAGGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAATCGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTggg                                      <  2:405185/143‑1 (MQ=255)                                                                                                         tGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTgggg                                     <  1:365019/143‑1 (MQ=255)                                                                                                             gCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAAGTGGGGCTaa                                 >  2:559602/1‑143 (MQ=255)                                                                                                                    taAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCccgc                          <  1:463147/143‑1 (MQ=255)                                                                                                                             agaTTGGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTCCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAgcgc                 <  1:667661/141‑1 (MQ=255)                                                                                                                              cATGCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGGTGGGGTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGcgcg                <  1:18778/143‑1 (MQ=255)                                                                                                                                           cGTTACCGCCACTTTCGTGGCGGTACGTTGAGGCATCGCGTCGAGCACACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGAGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGAc   <  2:623268/143‑1 (MQ=255)                                                                                                                                            gTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACg  >  2:738416/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                             GAACGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACG  >  NC_000913/3549777‑3550058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.