New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3549918 =	41 (0.730)	3 (0.060)	3/246	NT	7.4%	coding (153/2085 nt)	malQ	4‑alpha‑glucanotransferase
	?	NC_000913	3549940 =	37 (0.700)					coding (131/2085 nt)	malQ	4‑alpha‑glucanotransferase

ATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCTTTCCATCGAGCTTC  >  NC_000913/3549798‑3550078                                                                                                                                               |                                                                                                                                           aTGGCCTGTGTACGTCGTCCCTCCTGCGGTGGTCAGCAGCCAGCTATCTCCGCCGCTGCCCTCCCCCACCATCGGCATTTTTGTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTAc                                                                                                                                            <  1:301224/143‑1 (MQ=255)   ggCCTTTGTACTGCGTTCCTTCTTCGGGGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGt                                                                                                                                          <  1:846372/143‑1 (MQ=255)     ccTTTGTACTGCGTTCCTTCTTCGGTAGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAACCCATAACATTCCGGCCGAGCATTACCGCCACTATCGTTGCGCTACGTTg                                                                                                                                        >  2:439788/1‑143 (MQ=255)      gcgtGTACTGCGGTCCTTCTTCGGGGCTCAGCACCCGGCTATGCTCGCCGCTGCCCTCCACCGCCATCGGCATTTTTTTGCCGCTGGTATAAACCATGGCAGTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGa                                                                                                                                       <  2:718518/140‑1 (MQ=255)       tttGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATGGGCATTTTTTTGCAGCTGGTAAAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTAGCGGTACGTTGAt                                                                                                                                      >  2:956823/1‑143 (MQ=255)        ttGTACTGCGTTCCTTCTTCGGTGGTCCGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCCGGACTGGCGTTACCGCCACTTTCCTGGCGTTACTGTGATg                                                                                                                                     >  2:689667/1‑143 (MQ=255)        tgggaCTGCGTGCCTTCTGCGGGGGTCAGCAGCCAGCTATATTCGCCGCTGCCCGCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATg                                                                                                                                     <  1:402185/139‑1 (MQ=255)         cgtccTGCGTCCCGGCTTCGGTGGCCAGCACCCCGCTCTATTCGCCGCGGCCCTCCACCACCGTCGGCATTTTTGTGCCGCTGGTATAAACCATGACCTTCGGGACTGGCGTCGCCGCCCCTTTCGTGGCGGTACGTTGGTGc                                                                                                                                    <  2:741139/139‑1 (MQ=255)            aCTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGCCTGGCGTTACCGCCACCTTCGCGCCGGTACGTTGCTGCATc                                                                                                                                 >  2:718254/1‑143 (MQ=255)                 gctcccccttcGGTGGTGAGCAGCCAGCTATATCCGCCGCTGCCCTCCTCGACCAGCGGCATTGTCTTGACGCCGTTATAACTCATGCCCGGCGGGACTGGCGTTACCGCCACGTTCGGGGCGGTACGTCGATGCATCGCGTc                                                                                                                            <  2:235520/136‑1 (MQ=255)                 cttgtggcggcggggcttagccccaattacatcgattccctcggtacaccgcagtcgattagcgccgagaccaagcggcgtttgcttgacgtgatgcatcaacgTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTc                                                                                                                            >  2:169044‑M1/105‑143 (MQ=255)                       tcttcGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACCTTCGGGACTGGCGTTACCGCCACCTTCGGGGCGGTACGTTGATGCCTCGAGtaacgcca                                                                                                                      >  2:118218/1‑136 (MQ=255)                                  cagcagCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGGCAAGCAAACGCCGTTTgg                                                                                                           >  1:710700/1‑143 (MQ=255)                                  cagcagCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGCCAAGCAAACGCCGTTTgg                                                                                                           >  1:815278/1‑143 (MQ=255)                                    gcagcCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCCCTTTCGTGGCGGTACGTTGCTGCATGGCGTGGAGCAAACGCGGTGTGGtg                                                                                                         >  1:73875/1‑142 (MQ=255)                                    gcagcCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGtt                                                                                                         >  2:39205/1‑143 (MQ=255)                                         cagcTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAACCGCCGTTTGGTTTCGgc                                                                                                    >  1:933126/1‑143 (MQ=255)                                               atcaatgcccacggtaaaccgcagtcgattagcgccgaaaccaaacggcgtttgcttgacgcgatgcatcaacgTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCa                                                                                                                       <  1:625162‑M1/44‑1 (MQ=255)                                               atcaatgcccacggtaaaccgcagtcgattagcgccgaaaccaaacggcgtttgcttgacgcgatgcatcaacgTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCa                                                                                                                       >  2:625162‑M1/75‑118 (MQ=255)                                                atTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTCACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATc                                                                                             <  2:1055832/143‑1 (MQ=255)                                                 ttCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTGGGCGCTAATCg                                                                                            >  1:223915/1‑143 (MQ=255)                                                    gccgcTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTTATGCATCGCCTCAAGCAAACGCCGTTTGGTTTCGGCCCTAACCGACt                                                                                         >  2:530709/1‑143 (MQ=255)                                                    gccgcTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCACGCAAACGCCGTCTGATCTCGGCGCCACTCGACt                                                                                         >  2:1051851/1‑143 (MQ=255)                                                    gccgcTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCCAACGCCGTTTGGTTTCGGCGCTAATCGACt                                                                                         >  1:22728/1‑143 (MQ=255)                                                    gccgcTCCCCTCCACCCTCCGGGGCATTGTTTTGCCGCCGGTACAAGCCATGACATTCGGGACTGGCGTTACCGCCGCTTTCGTGGCGGTACGTTGATGCAGCGCGTCAAGCAAACGCCGTTTGGTTGCGGCGCTAATCGACt                                                                                         <  2:930823/143‑1 (MQ=255)                                                       gcTGCCCTCCACCACCATCGGCATTTATTTGCCGCTGGTCTAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCCAGCAAACGCCGTACGGCTCCGCCGCTACGCGACTGCg                                                                                      >  2:478254/1‑143 (MQ=255)                                                        ccgCCCTCCACCCCCACCTGCATTTTTTGGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTGCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCgg                                                                                     <  1:445824/141‑1 (MQ=255)                                                            ccTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGTCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGGTGCGGCGCTAGTCCGCTGCGGttca                                                                                 >  2:681251/1‑141 (MQ=255)                                                            ccTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTGATCGACTGCGGTTTa                                                                                 >  1:1789/1‑143 (MQ=255)                                                                   caccaTCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTTCGTTGATGCATCGCGTCAAGCAAACGCCGCTTGGTTTCGGCGCTAATTGACTGCGGGTGACCGgggg                                                                          >  2:763006/1‑143 (MQ=255)                                                                   caccaTCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGAGGCATCGCGTCAAGCTAACGTGGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTggg                                                                          >  1:691091/1‑143 (MQ=255)                                                                      caTCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAGCGCCGTTTGGTTTCGGCGCTGATCGCCTGCGGTTTACGGTGGGcgt                                                                       >  2:410377/1‑141 (MQ=255)                                                                          ggCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGAt                                                                   <  1:332517/143‑1 (MQ=255)                                                                           gCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAAGCGACTGCGGTTTACCGTGGGCATTGagg                                                                  >  1:229895/1‑141 (MQ=255)                                                                              tttttttGCCGCTGGTATAAACCCTGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTaa                                                               <  1:1039331/143‑1 (MQ=255)                                                                                   ttGCCGCTGGTATAACGGAGGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAATCGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTggg                                                          <  2:405185/143‑1 (MQ=255)                                                                                    tGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTgggg                                                         <  1:365019/143‑1 (MQ=255)                                                                                        gCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAAGTGGGGCTaa                                                     >  2:559602/1‑143 (MQ=255)                                                                                               taAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCccgc                                              <  1:463147/143‑1 (MQ=255)                                                                                                   tgcttgacgcgatgcatcaacgtaccgccacgaaagtggcggtaCGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGAt                                                                   <  1:625162‑M2/74‑1 (MQ=255)                                                                                                   tgcttgacgcgatgcatcaacgtaccgccacgaaagtggcggtaCGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGAt                                                                   >  2:625162‑M2/45‑118 (MQ=255)                                                                                                        gacgcgatgcatcaacgtaccgccacgaaagtggcggtaCGTTGATGCATCACGTCAAGCAAACGCCGCTTGGTCTCGGCGCTAATCGACTGCGGTGTACCGAGGGAATCGATGTAATTGGGGCTAAGCCCCGCcgccacaag                                     >  2:169044‑M2/40‑139 (MQ=255)                                                                                                        agaTTGGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTCCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAgcgc                                     <  1:667661/141‑1 (MQ=255)                                                                                                         cATGCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGGTGGGGTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGcgcg                                    <  1:18778/143‑1 (MQ=255)                                                                                                                      cGTTACCGCCACTTTCGTGGCGGTACGTTGAGGCATCGCGTCGAGCACACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGAGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGAc                       <  2:623268/143‑1 (MQ=255)                                                                                                                       gTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACg                      >  2:738416/1‑143 (MQ=255)                                                                                                                            CGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGAATGCGGTTTACCGTGGGAATTGAGGTAAGTGGAGCTAATCCCCGCCGCCAGCGCGGCATTATCGAGACGTGTGc                 <  2:333268‑M1/143‑1 (MQ=255)                                                                                                                             GCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTGTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAAATGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCt                <  2:113981‑M1/143‑1 (MQ=255)                                                                                                                                  ttgcGTGGCGGTACGTTGATGCATCGCGTCAAGCAACCGCCGTTTGGTTTGGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCTTTCCa           <  1:757948/140‑1 (MQ=255)                                                                                                                                    tCGTGGCGGTACGTGGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCTTTCCATc         <  1:838657/143‑1 (MQ=255)                                                                                                                                     cGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCTTTCCATCg        <  1:39205/143‑1 (MQ=255)                                                                                                                                      gtggcggtaCGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCTTTCCATCGa       >  1:326412‑M2/10‑143 (MQ=255)                                                                                                                                           ggtaCGTTGATGCATCGCGTCAAGCAAACCCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCTTTCCATCGAGCTTc  <  1:186677‑M2/139‑1 (MQ=255)                                                                                                                                               |                                                                                                                                           ATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCTTTCCATCGAGCTTC  >  NC_000913/3549798‑3550078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.