| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3883262 = | 55 (0.980) | 3 (0.060) | 3/252 | NT | 5.9% | coding (468/1404 nt) | dnaA | chromosomal replication initiator protein DnaA |
| ? | NC_000913 | 3883286 = | 43 (0.800) | coding (444/1404 nt) | dnaA | chromosomal replication initiator protein DnaA | |||||
GTGCATATAAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTA > NC_000913/3883124‑3883394 | gTGCATATAAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGc < 1:433140/143‑1 (MQ=255)caaacgcagccgcaacgtgctgcgccttctacgcgctcaggttgggataacgtcccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccaaCTGGc < 2:949325‑M1/5‑1 (MQ=255) gCATATAAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGGTATCCGCCACCTGGCGa > 1:988700/1‑143 (MQ=255) ccATATACACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGa < 1:977415/142‑1 (MQ=255) cATATAAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAg > 1:829138/1‑143 (MQ=255) ataAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAgccg > 1:347552/1‑143 (MQ=255) ccACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCcgcg > 1:944384/1‑143 (MQ=255) ccACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCAAGTGTTAGCCGCCAACTGGCGAGCAGCcgcg > 1:856418/1‑143 (MQ=255) ttGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCgcgcgcgc < 2:1081981/143‑1 (MQ=255) ttGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAAGGGCAACCGCCACCTGGCGAGCCGCCgcgcgcgc > 2:71112/1‑143 (MQ=255) ttGGCATTCGGCTTGCGCGCCATAACGCCATTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCCCCGCCAGGGTTATCCGCCCCCGGGCGAGCCGCCgcgcgcgc > 2:674176/1‑143 (MQ=255) ggcctgcGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTGATCCGCCACCTGGCGAGCCGCCGCGCGCGCCa < 1:516942/137‑1 (MQ=255) cATTCGGCTTGCGCGCCATAATGCCGGTACCGACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGCGCCGCCGCGCGCGcccgc > 2:396341/1‑140 (MQ=255) aTTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCGTGAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGccggct > 2:537019/1‑139 (MQ=255) aTTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGtt < 1:924681/143‑1 (MQ=255) aTTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAACGAACACCGGGTTCTAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGtt < 1:929706/143‑1 (MQ=255) cGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGt < 2:1106549/143‑1 (MQ=255) ggCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGtt > 1:694527/1‑143 (MQ=255) ttctacgcgctcaggttgggataacgtcccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccacCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTa > 1:317444‑M1/113‑143 (MQ=255) cgcCATAATGCCGTTGCCCACCGCTGGCGGCAGGTGCGTTTTGCCCAGCCCCGTGCCGCCATAAAGGAACAACGGGTTATTGGCACCGGCAGGGTTATCCGCTATCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTAc < 2:611208/143‑1 (MQ=255) aTAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTc > 2:301472/1‑143 (MQ=255) gCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGa < 1:243719/143‑1 (MQ=255) gataacgtcccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccaaCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAg > 2:329784‑M1/94‑142 (MQ=255) gataacgtcccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccaaCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAg < 1:329784‑M1/49‑1 (MQ=255) gTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAAGGACGt > 2:684277/1‑143 (MQ=255) aCCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAACCGCCACGCGAGCAAATTGAAAAGATTAACATTCAAAGAAGTTATCaaa > 1:437448/1‑143 (MQ=255) agGTGAGTTCTACCCACACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGAc < 1:125011/143‑1 (MQ=255) gTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTCTCACCCGTGTGTTTGACGt > 2:214116/1‑143 (MQ=255) gAGTTTTACCCAGGCCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGttt < 2:898118/143‑1 (MQ=255) gAGTTTTACCCAGCCCCGTGCCGCCATAAAGGAACAACGGGTTATCGGCACCGCCAGGGTTATCCGCCACATGGCGAGCCGCCGCGCGCGCCAGTTGGTTGGCAGGAACTGCAACGAAGTTATCAAACGTGTGTTTGACGttt < 2:963920/143‑1 (MQ=255) gAGTTTTACCCAGCCCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGttt < 1:503848/143‑1 (MQ=255) gAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGATATAGGAACCGCTAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGgtt > 1:759024/1‑143 (MQ=255) gTTTTACCCAGACCCGTGCTGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTAc < 1:115215/143‑1 (MQ=255) ttttACCCAGACCCGTGCCGCCATAAAGGAACAACGGTTTATAGGCACCGCCAGGGTTATCCGCCACCCGGCGAGCCGCCGCGCGCGCCCGGCGGCTCGACCTACCTCCCACGACGCTCTCCAACGTGTGCCTGAccctcacc > 2:22189/1‑136 (MQ=255) ttACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGtt < 2:347552/143‑1 (MQ=255) cgaGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGaa < 2:275525/141‑1 (MQ=255) ccAGCCCGGGGCCGCCCTAAAGGAACAACGGGTCGTGGGCTCTGCCGGTGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGaa < 1:462481/143‑1 (MQ=255) ccAGACCCGTGGCGCCATAAGGGAACCACGGGTTAGAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGaa < 2:287300/143‑1 (MQ=255) ccAGACCCGTGCCGCCATAAAGGAACAACGGGTTCTAGGCACCGCCAGGGTTACCCGCCACCCGGCGAGCAGCCGCGCGCGCCCGTTGCATAGACTTACCTTCAACGACGCCATCCAACGCGGGTTTGACGTTTCACTTAGaa > 2:427158/1‑143 (MQ=255) cAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTCGACGTTCGAAc > 2:576821/1‑143 (MQ=255) aGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACg < 1:718671/143‑1 (MQ=255) aCCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGAt > 1:1089942/1‑143 (MQ=255) tcGTGCCGCCATAAAGGAACAATGGGTTATGGGCACCGCTAGGGTTATCTGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAg < 2:829138/142‑1 (MQ=255) ccGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCAAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGACAGTTGTCTTGATTTACCTTCAACGAAGTTATCAAACGTGGGTTTGACGTTTACGTTAGAACGagag > 2:665148/1‑143 (MQ=255) gTGCCGCCATAAAGGAACACCGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGACGTTATCCCCCGTCTGTTTGACGCTTACGTTAGAACGCTAGGt > 1:51488/1‑143 (MQ=255) gccgccATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCAGCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATGTACCTTCAGCGAAGTTATCAAACGTGTGGTTGACGTTTGCGTTAGAACGGGAGGTCg > 2:936378/1‑143 (MQ=255) aTAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCCCCTGGCGAGCTGCCGCGCGCGCCAGTTGGGGAGATTTACCTTCAACGAAGTTAGCACACGTGTGTTTGACGTTTACGTTAGAAAGATAGGTCggggctg > 2:400220/1‑138 (MQ=255) aGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTgccgg < 2:846118/143‑1 (MQ=255) aacGAGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTgccggggccgg < 1:1070263/143‑1 (MQ=255) acGGTTTATAGCCCCCGGCAGGGTTGTCCGCCACCTGGCTGGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTgccggggccggg < 2:405426/143‑1 (MQ=255) gggTTCTAGGCACCGCCAGGGTTATCCGCCACCAGGCGAGCCACCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATTGGTCGGTTCTGCCGGGGCCGGGAc < 1:624114/143‑1 (MQ=255) gggTTATAGGCACCGCCAGGGTTATCTGCCACCGGTCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGCGCCGGGAc > 2:967864/1‑143 (MQ=255) gggTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGAc > 1:524173/1‑143 (MQ=255) gggTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGAc < 1:674176/143‑1 (MQ=255) taGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCACCGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATc > 1:329963/1‑143 (MQ=255) gCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTAGCTTCAAAGAAGTTATCAAACGTGTGTTTGCCGTTTACGTTAGAACGAGAGGTCGGTGCGGCGGGGGCCGGGCCGTTagcaca > 2:557753/1‑138 (MQ=255) gccGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAAc < 1:906548/142‑1 (MQ=255) aCCGGCAGGGTTAGGCGCGACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCGTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAAc < 2:483372/143‑1 (MQ=255) aGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAgc > 1:268731/1‑143 (MQ=255) tATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTa < 1:64160/143‑1 (MQ=255) | GTGCATATAAACCACTTTGGCATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTA > NC_000913/3883124‑3883394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |