New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3883262 =	55 (0.980)	3 (0.060)	3/252	NT	5.9%	coding (468/1404 nt)	dnaA	chromosomal replication initiator protein DnaA
	?	NC_000913	3883286 =	43 (0.800)					coding (444/1404 nt)	dnaA	chromosomal replication initiator protein DnaA

ATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTG  >  NC_000913/3883145‑3883423                                                                                                                                              |                                                                                                                                          aTTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGtt                                                                                                                                          <  1:924681/143‑1 (MQ=255) aTTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAACGAACACCGGGTTCTAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGtt                                                                                                                                          <  1:929706/143‑1 (MQ=255)    cGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGt                                                                                                                                       <  2:1106549/143‑1 (MQ=255)     ggCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGtt                                                                                                                                      >  1:694527/1‑143 (MQ=255)      ttctacgcgctcaggttgggataacgtcccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccacCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTa                                                                                                                                     >  1:317444‑M1/113‑143 (MQ=255)             cgcCATAATGCCGTTGCCCACCGCTGGCGGCAGGTGCGTTTTGCCCAGCCCCGTGCCGCCATAAAGGAACAACGGGTTATTGGCACCGGCAGGGTTATCCGCTATCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTAc                                                                                                                              <  2:611208/143‑1 (MQ=255)                 aTAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTc                                                                                                                          >  2:301472/1‑143 (MQ=255)                      gCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGa                                                                                                                     <  1:243719/143‑1 (MQ=255)                         gataacgtcccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccaaCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAg                                                                                                                   <  1:329784‑M1/49‑1 (MQ=255)                         gataacgtcccggccccggcagaaccgacctatcgttctaacgtaaacgtcaaacacacgtttgataacttcgttgaaggtaaatctaaccaaCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAg                                                                                                                   >  2:329784‑M1/94‑142 (MQ=255)                         gTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAAGGACGt                                                                                                                  >  2:684277/1‑143 (MQ=255)                                aCCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAACCGCCACGCGAGCAAATTGAAAAGATTAACATTCAAAGAAGTTATCaaa                                                                                                           >  1:437448/1‑143 (MQ=255)                                            agGTGAGTTCTACCCACACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGAc                                                                                               <  1:125011/143‑1 (MQ=255)                                              gTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTCTCACCCGTGTGTTTGACGt                                                                                             >  2:214116/1‑143 (MQ=255)                                                gAGTTTTACCCAGGCCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGttt                                                                                           <  2:898118/143‑1 (MQ=255)                                                gAGTTTTACCCAGCCCCGTGCCGCCATAAAGGAACAACGGGTTATCGGCACCGCCAGGGTTATCCGCCACATGGCGAGCCGCCGCGCGCGCCAGTTGGTTGGCAGGAACTGCAACGAAGTTATCAAACGTGTGTTTGACGttt                                                                                           <  2:963920/143‑1 (MQ=255)                                                gAGTTTTACCCAGCCCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGttt                                                                                           <  1:503848/143‑1 (MQ=255)                                                gAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGATATAGGAACCGCTAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGgtt                                                                                           >  1:759024/1‑143 (MQ=255)                                                  gTTTTACCCAGACCCGTGCTGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTAc                                                                                         <  1:115215/143‑1 (MQ=255)                                                   ttttACCCAGACCCGTGCCGCCATAAAGGAACAACGGTTTATAGGCACCGCCAGGGTTATCCGCCACCCGGCGAGCCGCCGCGCGCGCCCGGCGGCTCGACCTACCTCCCACGACGCTCTCCAACGTGTGCCTGAccctcacc                                                                                        >  2:22189/1‑136 (MQ=255)                                                     ttACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGtt                                                                                      <  2:347552/143‑1 (MQ=255)                                                         cgaGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGaa                                                                                  <  2:275525/141‑1 (MQ=255)                                                         ccAGCCCGGGGCCGCCCTAAAGGAACAACGGGTCGTGGGCTCTGCCGGTGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGaa                                                                                  <  1:462481/143‑1 (MQ=255)                                                         ccAGACCCGTGGCGCCATAAGGGAACCACGGGTTAGAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGaa                                                                                  <  2:287300/143‑1 (MQ=255)                                                         ccAGACCCGTGCCGCCATAAAGGAACAACGGGTTCTAGGCACCGCCAGGGTTACCCGCCACCCGGCGAGCAGCCGCGCGCGCCCGTTGCATAGACTTACCTTCAACGACGCCATCCAACGCGGGTTTGACGTTTCACTTAGaa                                                                                  >  2:427158/1‑143 (MQ=255)                                                          cAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTCGACGTTCGAAc                                                                                 >  2:576821/1‑143 (MQ=255)                                                           aGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACg                                                                                <  1:718671/143‑1 (MQ=255)                                                             aCCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGAt                                                                              >  1:1089942/1‑143 (MQ=255)                                                               tcGTGCCGCCATAAAGGAACAATGGGTTATGGGCACCGCTAGGGTTATCTGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAg                                                                            <  2:829138/142‑1 (MQ=255)                                                               ccGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCAAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGACAGTTGTCTTGATTTACCTTCAACGAAGTTATCAAACGTGGGTTTGACGTTTACGTTAGAACGagag                                                                            >  2:665148/1‑143 (MQ=255)                                                                 gTGCCGCCATAAAGGAACACCGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGACGTTATCCCCCGTCTGTTTGACGCTTACGTTAGAACGCTAGGt                                                                          >  1:51488/1‑143 (MQ=255)                                                                   gccgccATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCAGCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATGTACCTTCAGCGAAGTTATCAAACGTGTGGTTGACGTTTGCGTTAGAACGGGAGGTCg                                                                        >  2:936378/1‑143 (MQ=255)                                                                         aTAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCCCCTGGCGAGCTGCCGCGCGCGCCAGTTGGGGAGATTTACCTTCAACGAAGTTAGCACACGTGTGTTTGACGTTTACGTTAGAAAGATAGGTCggggctg                                                                  >  2:400220/1‑138 (MQ=255)                                                                             aGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTgccgg                                                              <  2:846118/143‑1 (MQ=255)                                                                                   aacGAGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTgccggggccgg                                                        <  1:1070263/143‑1 (MQ=255)                                                                                    acGGTTTATAGCCCCCGGCAGGGTTGTCCGCCACCTGGCTGGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTgccggggccggg                                                       <  2:405426/143‑1 (MQ=255)                                                                                      gggTTCTAGGCACCGCCAGGGTTATCCGCCACCAGGCGAGCCACCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATTGGTCGGTTCTGCCGGGGCCGGGAc                                                     <  1:624114/143‑1 (MQ=255)                                                                                      gggTTATAGGCACCGCCAGGGTTATCTGCCACCGGTCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGCGCCGGGAc                                                     >  2:967864/1‑143 (MQ=255)                                                                                      gggTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGAc                                                     <  1:674176/143‑1 (MQ=255)                                                                                      gggTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGAc                                                     >  1:524173/1‑143 (MQ=255)                                                                                            taGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCACCGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATc                                               >  1:329963/1‑143 (MQ=255)                                                                                             cttcgttgaaggtaaatctaaccaactggcgcgcgcggcggctcgccagTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATc                                               >  2:329784‑M2/50‑142 (MQ=255)                                                                                             cttcgttgaaggtaaatctaaccaactggcgcgcgcggcggctcgccagTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATc                                               <  1:329784‑M2/93‑1 (MQ=255)                                                                                               gCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTAGCTTCAAAGAAGTTATCAAACGTGTGTTTGCCGTTTACGTTAGAACGAGAGGTCGGTGCGGCGGGGGCCGGGCCGTTagcaca                                            >  2:557753/1‑138 (MQ=255)                                                                                                 gccGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAAc                                          <  1:906548/142‑1 (MQ=255)                                                                                                 aCCGGCAGGGTTAGGCGCGACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCGTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAAc                                          <  2:483372/143‑1 (MQ=255)                                                                                                       aGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAgc                                    >  1:268731/1‑143 (MQ=255)                                                                                                            tATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTa                               <  1:64160/143‑1 (MQ=255)                                                                                                               taaccaactggcgcgcgcggcggctcgccagGTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGaa                            >  1:317444‑M2/32‑143 (MQ=255)                                                                                                                       TGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATGTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCgcagc                    >  1:66402‑M1/1‑143 (MQ=255)                                                                                                                        GGCGGGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCGCAACCTGAGCGCGTAGAAGGCgcagca                   >  2:694527‑M1/1‑143 (MQ=255)                                                                                                                          CGAGCGGCCGTGCGCGCCAGTTGGTTAGAGTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACg                 >  2:358789‑M1/1‑143 (MQ=255)                                                                                                                                gccgcGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGCTAGGTCGGTTCGGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCgg           <  1:967864/143‑1 (MQ=255)                                                                                                                                gccgcGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTTCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCACAGCCCGTTGCgc           >  2:586679/1‑142 (MQ=255)                                                                                                                                  cgcgcgcgCCAGTTGGTTGGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTCGCAGGCGCAGCACGCTGCGGCt         >  1:390015/1‑143 (MQ=255)                                                                                                                                         gccagTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTg  <  2:949325‑M2/138‑1 (MQ=255)                                                                                                                                              |                                                                                                                                          ATTCGGCTTGCGCGCCATAATGCCGTTACCCACCGCATGCAGCAGGTGAGTTTTACCCAGACCCGTGCCGCCATAAAGGAACAACGGGTTATAGGCACCGCCAGGGTTATCCGCCACCTGGCGAGCCGCCGCGCGCGCCAGTTGGTTAGATTTACCTTCAACGAAGTTATCAAACGTGTGTTTGACGTTTACGTTAGAACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTG  >  NC_000913/3883145‑3883423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.