New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 227039	36 (0.640)	3 (0.060)	3/252	NT	8.3%	noncoding (1281/2904 nt)	rrlH	23S ribosomal RNA
	?	NC_000913	= 227046	32 (0.590)					noncoding (1288/2904 nt)	rrlH	23S ribosomal RNA

ATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACG  >  NC_000913/226905‑227187                                                                                                                                              |                                                                                                                                              aTGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGc                                                                                                                                              <  1:5919‑M2/143‑2 (MQ=255) aTGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGAAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGAGAAAAGc                                                                                                                                              <  2:294570‑M2/143‑2 (MQ=255)    cACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAGGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcgcg                                                                                                                                           <  1:386781‑M2/143‑5 (MQ=255)     aCCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTCAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATACGGCGGGGGAAGAGccagc                                                                                                                                          <  2:807304‑M2/143‑6 (MQ=255)         aaGCTGCGGCAGCCACGCTTATTCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGc                                                                                                                                      <  1:111267/143‑1 (MQ=255)          agttGCGGCGGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGTAAAGCCCGCTCGcc                                                                                                                                     <  2:997436/140‑1 (MQ=255)          accggcgcCACCGACGCTTATGCTTTGTTGGGTAGGGGAGCGTTCTGTATGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGcc                                                                                                                                     <  2:703637/139‑1 (MQ=11)              gtggCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                                                                                                                                 <  1:400855/141‑1 (MQ=38)               cGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAg                                                                                                                                >  2:627422/1‑143 (MQ=37)               cGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTGCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAg                                                                                                                                >  1:1053136/1‑143 (MQ=38)                  cAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAcc                                                                                                                             <  1:913011/143‑1 (MQ=39)                    gCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGAGAAAGCGGGTGGAAAGCGCGCTCGCCGGAAGACCaa                                                                                                                           >  2:972459/1‑143 (MQ=255)                         gCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGACGTGCGAATGCTGACATAAGTAACGATAAAGCGGGCGAAAAGCCCGCTCGCCGGCAGACCAAGGGtt                                                                                                                      >  1:733318/1‑143 (MQ=255)                         gCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAggggt                                                                                                                      >  1:381668/1‑141 (MQ=37)                          cTTATGCGTTGTGGGCGCGGGGGGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCCGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc                                                                                                                     <  2:267248/143‑1 (MQ=11)                            tATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACTATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt                                                                                                                   <  1:867304/143‑1 (MQ=37)                            tATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt                                                                                                                   <  2:185417/143‑1 (MQ=37)                            caTGCGTTGTCGGCTACGGGCGCGTTCTGTAAGCCGGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGAAATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt                                                                                                                   <  1:90923/142‑1 (MQ=11)                              tGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCATGt                                                                                                                 >  1:343691/1‑143 (MQ=37)                               gCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCtctc                                                                                                                >  1:553323/1‑143 (MQ=37)                                   cgttgGGTAGGGGAGCCTTCTGTCAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGGATCAGAAGCGCTACTGCGGACATAAGTTACGATAAAGCGGGTGCTAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAAc                                                                                                            <  2:603013/142‑1 (MQ=11)                                      tgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGtt                                                                                                         <  2:895621/143‑1 (MQ=35)                                        ggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGCGTACTGTGCGGTATGCTGGAGGTATCAGAAGTGCGAATGATGAAATAAGAAACGAAAAAGCGGGCAAAAAGACCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTaa                                                                                                       >  1:690997/1‑143 (MQ=11)                                             gggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                                                                                                  >  1:114689/1‑143 (MQ=35)                                             gggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                                                                                                  >  1:517642/1‑143 (MQ=35)                                              ggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGCGAAAAGCCCGCTCGCCGGAAGACCACCAGCACCGCTCCCACGTTAATCcggg                                                                                                 >  2:1010283/1‑143 (MQ=11)                                                 gCGTTCTGTAAGCCTGTGAAGGCGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAg                                                                                              <  1:133019/143‑1 (MQ=25)                                                  tgTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACAGAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg                                                                                             >  1:157641/2‑143 (MQ=25)                                                  cGTTCTGCAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg                                                                                             <  1:394193/143‑1 (MQ=25)                                                    tgcTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt                                                                                           <  1:59342/141‑1 (MQ=21)                                                          aaGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCg                                                                                     <  2:1053136/143‑1 (MQ=34)                                                             gcTGGGAAGGTGTCCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcc                                                                                  <  2:51878/142‑1 (MQ=17)                                                                gtgAATGTGTACTGTTAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCt                                                                               <  2:40423/143‑1 (MQ=21)                                                                       tgtACTTGGAGGTATGCTAGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCACCGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGTCGa                                                                        <  2:964357/143‑1 (MQ=11)                                                                       tgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGa                                                                        <  1:934195/143‑1 (MQ=35)                                                                       tgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGa                                                                        >  1:1044401/1‑143 (MQ=34)                                                                       tgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCACGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGa                                                                        >  1:927157/1‑143 (MQ=21)                                                                                aGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAg                                                               >  2:27197/1‑143 (MQ=32)                                                                                  gTATGGTGGAGGTGCCAGAAGTGCGAATGCGGGCATAAGTAACGATACAGCGGGTGAAAAGCCCGCTCGCCGGGAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGc                                                             <  2:665831/143‑1 (MQ=11)                                                                                                         cGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctcacagtacaccttcacaggcttacacaacgcacccccaaccaacaaccc                                      <  2:101049‑M2/143‑106 (MQ=255)                                                                                                                              aTAAAGCGGGTGAAAAGcccgctttatcgttacttatgtcagcagtcgcacttctgatacctccagcatacctcacagtacaccttcacaggcttacagaacgctcccctacccaacagcgcataagcgtcgctgccgcagct                 <  2:885811‑M2/143‑127 (MQ=255)                                                                                                                                aaaGCGGGTGAAAAGcccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctcacagtacaccttcacaggcttacagaacgctcccctacccaaccacgcatacgcgtcgctgccgcagcttc               <  1:824999‑M2/143‑129 (MQ=255)                                                                                                                                             cgcccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatacctcacagtacaccttcacaggcttacagaacgctcccctacccaacaccgcataagcgtcgctgccgcagcttcggtgcatggttta  >  1:106913‑M2/2‑2 (MQ=255)                                                                                                                                              |                                                                                                                                              ATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACG  >  NC_000913/226905‑227187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.