New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	315260 =	NA (NA)	4 (0.070)	3/252	NT	NA	noncoding (32/1255 nt)	IS3	repeat region
	?	NC_000913	315291 =	NA (NA)					noncoding (63/1255 nt)	IS3	repeat region

GAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGC  >  NC_000913/315149‑315370                                                                                                                                               |                                                                                gAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATGTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca                                                                                 <  2:746567/143‑1 (MQ=255)   aGTCTGGCTCTTTTGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg                                                                               <  1:421101/143‑1 (MQ=255)    ggccggCTGTTTGGTATAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGAGCCGCTTCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                                              <  2:607609/139‑1 (MQ=37)     tCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc                                                                             >  1:831015/1‑143 (MQ=255)     tCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc                                                                             <  2:825400/143‑1 (MQ=255)       gggCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGCGGTGACTCACATGACaa                                                                           >  1:779085/1‑143 (MQ=255)       gggCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAGaa                                                                           >  1:1022215/1‑143 (MQ=255)            gTTCGGTAAAGATTAGCGCCAGAACGCCCCGCATGCTCTTTCTGCCGAGGTGACCGATACGCCAGTGCCTCTTCCCCAGCAATAGTGGACACGCGGCTAAGTGTGTGATCTCTCAGTCAGAGCTGACTCACATGACAAAAACa                                                                      <  1:136954/143‑1 (MQ=21)             tttGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg                                                                     >  2:1107562/1‑143 (MQ=255)                 gTAAAGATAGGCGCCAGAAAGAGCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc                                                                 <  2:173305/143‑1 (MQ=255)                 gTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGCGACGACCATGGCAAAAAcggactc                                                                 >  2:154153/1‑137 (MQ=25)                        tAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCTCTCAGTCAGAGGTGACTCAAATGACCAAAACAGTATCAACCAGt                                                          >  2:469631/1‑143 (MQ=255)                           gcgcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACACAGGAATAGTGGACACGTGGTTGAGTGGGAAAACACTGAGTCAGAGGTGACTCACATGACAAAAACAGTATTAACCAGTaaa                                                       >  1:510899/1‑143 (MQ=21)                              tcAGAAAGACCCGCATGATATTTCTGACGAGATGACCTATACGCGAGAGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaaaa                                                    <  2:972859/142‑1 (MQ=18)                                agacagacCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTGTCAACCAGTAAAAAAcc                                                  <  1:716561/143‑1 (MQ=255)                                aGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcc                                                  <  2:536669/143‑1 (MQ=255)                                 gAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc                                                 <  1:39030/143‑1 (MQ=255)                                  aaaGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACCCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc                                                >  2:251350/1‑143 (MQ=255)                                    aGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAACACCCCGt                                              >  2:808710/1‑143 (MQ=255)                                       cccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                                           >  2:63845/1‑143 (MQ=255)                                        ccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCACCCAGTAAAAAACCCCGTAAAc                                          >  2:1043075/1‑143 (MQ=255)                                        ccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAc                                          >  1:591468/1‑143 (MQ=255)                                        ccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAATCTCAGTCAGAGGTGACTCACAAGACAAAAACAGTATCAACCAGTAAAAAAACCCGTAAAc                                          >  1:747346/1‑143 (MQ=255)                                         cGCATGCTCTTTCTGCCGAGGTGACCTACACGCCAGTGCCTCTTACCCAGCATGCGGCGACACTGGGCTGGGTGACTACACTCCCAGTCAGAGAAGACGCACAGGACAACAACCAGATCAGCCAGGAAAAACCCCCGCAAACa                                         >  2:391288/1‑143 (MQ=255)                                         cGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCCATAGTGGACACGCGCCTCAGTGTGTAAACTCTCAGTCAGAGGTGACTCACATGACATAAACAGTATCAACCAGTAAAAAACCCCGTAAACa                                         <  2:897383/143‑1 (MQ=18)                                         cGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGCAAACa                                         >  1:433291/1‑143 (MQ=255)                                          gCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCCGAGGCGACTCACCTGCCAACAACAGTACCAACCAGTAAAAAACCCCGTAAACAg                                        >  1:366254/1‑143 (MQ=18)                                          gCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGCATCAACCAGTAAAAAACCCCGTAAACAg                                        <  1:495055/143‑1 (MQ=255)                                               cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTc                                   >  1:635981/1‑143 (MQ=255)                                                tgtttGTGCGGAGGTGAGGTGTACGCCAGTGCCGGGTAGCCAGCAATAGTGGACAGGTGGGTAAGTGAGGAAACGCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCg                                  <  2:331525/141‑1 (MQ=11)                                                 aTTTCTGGCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc                                 <  2:977483/143‑1 (MQ=255)                                                 aTTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc                                 >  1:629601/1‑143 (MQ=255)                                                  tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCGATAGTGGACACGCGGCTAGGTGAGTAACCTCTCAGTCAGAGGCGACTCACATGACCAAAACAATATCAACCAGAAAAAAACCCCGACACCAGCATTCGcc                                >  2:837765/1‑143 (MQ=255)                                                       gCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATCGTGGACACGCGGCTAAGTGAGTACACTCGCAGTCAGAGGCGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAACCCGAAAACAGGATACGCCCGagt                           >  2:467652/1‑141 (MQ=17)                                                        ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAtt                          >  1:709616/1‑143 (MQ=255)                                                             ttGACCTATGCCCCAGTGCCTCTTACCCACCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa                     <  2:744990/142‑1 (MQ=255)                                                             ttGACCTATATGCCAGTACCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCTGATTACTGCATTCGCCTGAATTTCGCa                     <  2:968160/142‑1 (MQ=14)                                                             gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa                     <  1:1107562/143‑1 (MQ=255)                                                               gACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt                   >  1:5883/1‑143 (MQ=255)                                                                  cTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAGGACAAGAACAGTATCAACCAGTAAAAAACCCCGCAAACAGCATTCGCCTCAATTTGGccatgag                >  1:826645/1‑137 (MQ=14)                                                                  cTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACGCACATGACAAAAACAGTCTCAACCAGGAAAAAACCCCGTAACCAGCACTCGCCTGAATTTCGCAGTGaa                >  1:965725/1‑143 (MQ=14)                                                                     taCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCGCATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGcc             >  1:633097/1‑143 (MQ=255)                                                                       cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAGTGACTTGACAAGAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGCAGCCCt           >  1:415948/1‑143 (MQ=11)                                                                       cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGCATTTCGCAGTGAAGCCCt           >  1:773110/1‑143 (MQ=38)                                                                        gCCAGTGCCTCTTACCCAGCAATCGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAATCACATGACAAAAACAGTAGCAACCAGTAAAAAACGCCGTAAACAGCATTCGCCTGACTTTCGCGGTGACGcccgg          >  1:765271/1‑141 (MQ=11)                                                                        gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGCCCAAAACAGTATCAACCACTAAAAAACCCCGTAAACAGCATTGGCCCGAATTCCGCAGTGAAGCCCtc          >  2:499660/1‑142 (MQ=11)                                                                        gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACCACAAAAGGGTGTGTCTGGTAAAAACCCCGTAAACAGCATTCGCCTGACTTTCGCAGTGAAGCCCTg          >  1:511461/1‑143 (MQ=11)                                                                        gCCAGGGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTg          <  1:197117/143‑1 (MQ=21)                                                                          cAGCGCCTCTTCCCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGaa        <  1:525635/143‑1 (MQ=17)                                                                            gTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGCCTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCCGTAAAGCCCTGGAGc      >  1:814828/1‑143 (MQ=255)                                                                              gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCtt    >  1:885502/1‑143 (MQ=32)                                                                                ctctTACCCAGCAATAGTGAACACGCGGCTAAGTGAGTAAACCCTCAGTCAGAGGTGCCTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGc  <  1:975312/143‑1 (MQ=2)                                                                                                                                               |                                                                                GAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGC  >  NC_000913/315149‑315370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.