New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 632332	43 (0.760)	3 (0.050)	3/258	NT	6.7%	coding (151/198 nt)	ybdD	conserved protein YbdD
	?	NC_000913	= 632374	42 (0.760)					coding (193/198 nt)	ybdD	conserved protein YbdD

TGATTGGTATGCCTGATTACGACAACTATGTCGAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCGGACGCAGGGTGTGGGCAATCACTTTGTCGATCTCCG  >  NC_000913/632237‑632513                                                                                                                                          |                                                                                                                                            tgatTGGTATGCCTGATTACGACAACTATGTCGAACATATGCGGGTAAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTGCGGTGGAAAGGGCGGCGCGCGCTGCTGCTaa                                                                                                                                        >  1:63834/1‑143 (MQ=255)            ccTGATTACGACAACTATGTCGAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCCGCTAAATCTGtcggtc                                                                                                                             >  2:955730/1‑138 (MQ=255)             cTGATTACGACAACTATGTCGAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCa                                                                                                                            <  1:928189/143‑1 (MQ=255)                aTTACGACAACTATGTCGAACATATGCGGGTTAACCATCCCGATCACACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGc                                                                                                                         <  1:191769/143‑1 (MQ=255)                aTTACGACAACTATGTCGAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAACGGCGGCGCGCGCTGCCGCTAAATTTGTACGTCAGGc                                                                                                                         >  2:213206/1‑143 (MQ=255)                   aCGACAACTATGTCGAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCttt                                                                                                                      <  1:534185/143‑1 (MQ=255)                     gACAACTATGTCGAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGCCTTTCCGTGGGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTACATTTGTACGTCCGGCTCTaa                                                                                                                    >  1:990153/1‑143 (MQ=255)                      aCAACTATGTCGAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTCTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCGACATTCGTACGTCAGGccctaac                                                                                                                   >  2:1027914/1‑137 (MQ=255)                           tttGTCGCATATTTGCCGCTTAACCATCCCGATCAAAGTCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGAtt                                                                                                              <  2:657002/141‑1 (MQ=255)                              gTCGAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCa                                                                                                           <  1:633914/143‑1 (MQ=255)                                 gAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTGTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCCCTGCTGCTAAATTTGGACGTCAGGCTTTAAACGATTCCACtt                                                                                                        >  2:915042/1‑143 (MQ=255)                                  aaCATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTACACCATTCCACtct                                                                                                       >  2:256336/1‑141 (MQ=255)                                     atatGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCCGGCCGCTCGCTACTGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACtttttt                                                                                                    <  1:1102052/143‑1 (MQ=255)                                            ggTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCt                                                                                             >  1:321505/1‑143 (MQ=255)                                            ggTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCt                                                                                             <  2:679504/143‑1 (MQ=255)                                                 aCCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTGCGGTGGAAAAGGCGGCGCGCGCTGCTGCTACATATGTACGTCAGGCTTTCAGCGATTCCACTTTGTTGACGGCTGcccc                                                                                        >  2:622221/1‑140 (MQ=255)                                                 aCCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACg                                                                                        >  2:614385/1‑143 (MQ=255)                                                         gATCAAACGCCGATGACCTACGAAGAGTTATACAGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCTCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGCACGCTGCCCGCAACGtca                                                                                >  2:182556/1‑141 (MQ=255)                                                          aTCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGCGCGGCAGGACGCGCGCTACGGTGG‑AAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTAtgt                                                                              >  2:352751/1‑141 (MQ=255)                                                             aaaCGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGGGCGGTGCGGCCAAGTTTGTCCGTGATGCGTGAAACGATTCCACTTTTTTGAACGCTGCACGCCACGTATCTgg                                                                            >  2:234105/1‑143 (MQ=255)                                                              aaCGCCGATGACCTACGAAGAGTTTTTCGGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGgt                                                                           <  2:921949/143‑1 (MQ=255)                                                               aCGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGgtg                                                                          <  1:921586/143‑1 (MQ=255)                                                                cGCCGATGACCTACGAAGAGTGGTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGgtgt                                                                         <  2:1096212/143‑1 (MQ=255)                                                                 gCCGATGACCTACGAAGAGTTTTGCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGgtggc                                                                        >  2:1093263/1‑141 (MQ=255)                                                                  ccGATGACCTACGAAGAGTTTTTCCGTGAGCGGCGGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCa                                                                       <  2:498271/143‑1 (MQ=255)                                                                       gACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTg                                                                  <  1:300171/143‑1 (MQ=255)                                                                          ctgcGAGGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGGGGAAAAGGCGGCGCGCGCTGTTGCTAAATTTGTACGTCAGGCTTTGAACGATTCCTCTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACt                                                               <  1:840890/140‑1 (MQ=255)                                                                              gAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACGGGCa                                                           >  1:112319/1‑143 (MQ=255)                                                                                   gTTTTTCCGTGAGCGGCAGGACGCGCGCTATGGTGGAAAAGGCGGCGCGCGTTGCTGCTAAATTTGTACGTTAGGTTTTAAACGATTCCGCTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTaa                                                      <  1:521770/143‑1 (MQ=255)                                                                                      tttCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAAGTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTaatga                                                   >  2:861659/1‑143 (MQ=255)                                                                                         ccGTGCGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGCCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTaatgaatg                                                <  1:568483/143‑1 (MQ=255)                                                                                           gTGCGCGGCCGGCCGCGGGCTCCAGTGGAAAAGGCGGCGCGCGCTAATATTAGATGCTCACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGa                                              <  2:233547/143‑1 (MQ=255)                                                                                           gTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAGCGCTGCACGCAACGTATCTGGTGTCAGTGTGACTGGCAGGTaatgcatgaa                                              >  1:851689/1‑141 (MQ=255)                                                                                            tGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTgctcacggaaaaactcttcgtaggtcatcggcgtttgatcgggatggttaacccgcatatgttcgacatagttgtcgtaatcaggcataccaatca                                             <  1:521595‑M2/143‑97 (MQ=255)                                                                                               gCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTgctcacggaaaaactcttcgtaggtcatcggcgtttgatcgggatggttaacgcgcagatgttcgacatagttgtcgtaatcaggcataccaatcatca                                          <  2:123718‑M2/143‑100 (MQ=255)                                                                                                   cAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCCCCg                                      >  1:175940/1‑143 (MQ=255)                                                                                                   cAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCg                                      >  1:631148/1‑143 (MQ=255)                                                                                                    aGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCgg                                     >  1:721179/1‑143 (MQ=255)                                                                                                     ggACGCGCGCTACGGTGGAAAAGGCGGCGCGCACTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGACTCGACTCCACCgca                                    >  1:900776/1‑141 (MQ=255)                                                                                                      gACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTgctcacggaaaaactcttcgtaggtcatcggcgtttgatcgggatggttaacccgcatatgttcgacatagttgtcgtaatcaggcataccaatcatcagcttcgc                                   <  1:120577‑M2/143‑107 (MQ=255)                                                                                                                 cGGTGGAAAGGGCGGCGCGCGCTGCTGCTAAATTGGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCGGACGCAGGGTGTgg                        <  2:157125/143‑1 (MQ=255)                                                                                                                 cGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCGGACGCAGGGTGTgg                        <  1:161737/143‑1 (MQ=255)                                                                                                                 cGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAAGTTGGACGTCAGGCTTGAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCGGACGCAGGGTGTgg                        <  1:419508/143‑1 (MQ=255)                                                                                                                      gAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCGGACGCAGGGTGTGGGCAAt                   >  2:149078/1‑143 (MQ=255)                                                                                                                              gcctcgcgcTGCTTCTAAATTTGTACGTCAGTCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCGGACGCAGGGTGTGGGCAATCACTTTGt           <  2:912400/139‑1 (MQ=255)                                                                                                                               gcgcgcgcTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTGTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCGGACGCAGGGTGTGGGCAATCACTTTGTc          <  1:566947/143‑1 (MQ=255)                                                                                                                                      ctgctgctAAAGTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCGGACGCAGGGTGTGGGCAATCACTTTGTCGATCTcc   <  1:1055793/143‑1 (MQ=255)                                                                                                                                       tgctgctAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCGCGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCGGACGCAGGGTGTGGGCAATCACTTTGTCGATCTCCg  >  1:576943/1‑143 (MQ=255)                                                                                                                                          |                                                                                                                                            TGATTGGTATGCCTGATTACGACAACTATGTCGAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAAGAGTTTTTCCGTGAGCGGCAGGACGCGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAAATTTGTACGTCAGGCTTTAAACGATTCCACTTTTTTGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGTAATGAATGGACTCCACCGGACGCAGGGTGTGGGCAATCACTTTGTCGATCTCCG  >  NC_000913/632237‑632513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.