New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4567210	43 (0.760)	3 (0.060)	3/250	NT	6.7%	coding (37/1281 nt)	yjiN	DUF445 domain‑containing protein YjiN
	?	NC_000913	= 4567214	43 (0.810)					coding (33/1281 nt)	yjiN	DUF445 domain‑containing protein YjiN

ACCGCAAACCAGTCCGCCAGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCA  >  NC_000913/4567074‑4567348                                                                                                                                             |                                                                                                                                       aCCGCAAACCAGTCCGCCAGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTGGCAGGGGCGATAAGCAGTAAAGAGAGCGCCAACCTTtt                                                                                                                                      <  1:202155‑M2/143‑3 (MQ=255)  ccGCACACCAGCCCGCCAGCGCGCCGACCATCGCCGCGGCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTttg                                                                                                                                     >  2:762276‑M2/1‑140 (MQ=255)   cGCAAACCAGTCCGCCAGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTttgg                                                                                                                                    <  1:853932‑M2/143‑5 (MQ=255)      aaaCCAGTCCGCCCGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTttggcgc                                                                                                                                 >  2:589993‑M2/1‑136 (MQ=255)      aaaCCAGTCCGCCAGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTttggcgc                                                                                                                                 >  2:731140‑M2/1‑136 (MQ=255)          cAGTCCGCCAGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCt                                                                                                                             <  1:1048157/143‑1 (MQ=255)            ggccGACAGCGCGCCGACCATCGCCGCTTTGGCAATCACCAACACGCCGCTGACCGAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGa                                                                                                                           <  1:1042050/141‑1 (MQ=255)            gcccGCCAGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGGAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGa                                                                                                                           <  1:116589/141‑1 (MQ=255)            gTCCGCCAGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGa                                                                                                                           <  2:80342/143‑1 (MQ=255)            gTCCGCCAGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGa                                                                                                                           <  2:481128/143‑1 (MQ=255)            gTCCGCCAGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGa                                                                                                                           <  2:172976/143‑1 (MQ=255)                 ccAGCGCGCCGACCGTCTCCGCTTCAGCAATCGCCTTCACCCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCg                                                                                                                      <  2:1036864/143‑1 (MQ=255)                   aGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGAt                                                                                                                    <  1:173655/143‑1 (MQ=255)                     cgcgcCGACCATCGCCGCTTCACAACTCTCCTCTGTGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGa                                                                                                                  <  1:1040844/143‑1 (MQ=255)                            aCCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTAtt                                                                                                           >  1:841741/1‑143 (MQ=255)                             ccATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTc                                                                                                          <  1:929105/143‑1 (MQ=255)                              cATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCACAAACGGCGTACCGACAAAGGTAGCAGCGGCGATAGGCAGTAAAGAGCGCGCCCACCTTCTGCCGCGTCTGAGTTCGATGAGTTTATTCa                                                                                                         >  1:188127/1‑143 (MQ=255)                                  gccgcTTCAGCAATCGCCTTCGCGCCGCTCACCCAAACATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTATTGGCGCGTCCGCGTTCGACGAGTTTATACATaca                                                                                                     >  2:905752/1‑141 (MQ=255)                                      cTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTa                                                                                                 <  2:202155/143‑1 (MQ=255)                                        tCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGGCTGAGATCGAGGAGTTTATTCCAGACGTTAAg                                                                                               >  2:1097840/1‑143 (MQ=255)                                        tCAGCAATCGCCTGCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAg                                                                                               <  2:739772/143‑1 (MQ=255)                                           gCAACCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAACCAGCGTAACGACGAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAAt                                                                                            <  1:435295/143‑1 (MQ=255)                                              agcgacgtCACCCCGCTCACCCGAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGACACGCCGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATaga                                                                                         <  2:727691/136‑1 (MQ=255)                                                 gCCGTCACGCCGCGCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGcc                                                                                      <  2:691810/143‑1 (MQ=255)                                                          ccgcACACCCAAAAAGTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCg                                                                             <  1:55066/143‑1 (MQ=255)                                                          cagcTCACCCAAAAATTGCGCGGCAAAAACAGCGTAACGACAAGGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCg                                                                             <  2:842359/141‑1 (MQ=255)                                                           cgcTCGCCCGAAAGTTGGGCGGCAAAACCAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCgg                                                                            <  2:833548/143‑1 (MQ=255)                                                                   cAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAACGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATAGCGCa                                                                    >  2:207630/1‑143 (MQ=255)                                                                           gggCGGCAAAAACAGCGTAACGACAAACGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCAc                                                            <  1:59847/143‑1 (MQ=255)                                                                             gcggcAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTg                                                          >  1:101567/1‑143 (MQ=255)                                                                              cggcAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCCCTGc                                                         >  1:884744/1‑143 (MQ=255)                                                                                gcAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCGGACGGCCGGACCGCCGAAAAATCACTGctc                                                       >  2:817914/1‑143 (MQ=255)                                                                                 cAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGCCTGAGTTCGATGAGCTTAATCATAACGCGAAGAATAGAGCCTGACACCCGGATCGCGCAACACACACTGctcc                                                      >  2:748489/1‑143 (MQ=255)                                                                                   aaaaCAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGctcctc                                                    <  2:314925/143‑1 (MQ=255)                                                                                       caccGTAACGACAAAAGTAGGGGGGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACt                                                <  1:31888/140‑1 (MQ=255)                                                                                                 aCAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGCTCGCGCAACAATCCCTGCTCCTCCCCTCTCTCGGCTg                                      >  1:34732/1‑143 (MQ=255)                                                                                                 aCAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTg                                      >  1:832851/1‑143 (MQ=255)                                                                                                   aaaGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCGCGGCTGcc                                    >  2:248250/1‑143 (MQ=255)                                                                                                       gTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGTGGAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGAt                                >  1:751354/1‑143 (MQ=255)                                                                                                        tAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATg                               <  1:280624/143‑1 (MQ=255)                                                                                                        tAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGATCGATGAGATTATGCATAACGGTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTACTCCACTAGCCCGGCTGCCTGATg                               >  1:475719/1‑143 (MQ=255)                                                                                                          gcagcGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATccc                                                                       >  1:238706/1‑99 (MQ=255)                                                                                                          gcagcGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTGATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATcgc                                                                       <  2:238706/101‑1 (MQ=255)                                                                                                           cagcGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTg                            <  1:971082/143‑1 (MQ=255)                                                                                                              cggcgATAAGCAGTAAAGAGAGCGCCAACCTTttggcgctctctttactgcttatcgccgctgctacctttgtcgttacgctgtttttgccgcccaattttt                                                                  <  2:481734‑M2/102‑71 (MQ=255)                                                                                                              cggcgATAAGCAGTAAAGAGAGCGCCAACCTTttggcgctctctttactgcttatcgccgctgctacctttgtcgttacgctgtttttgccgcccaattttt                                                                  >  1:481734‑M2/1‑32 (MQ=255)                                                                                                                         aGTAAAGAGAGCGCCAACCTGCTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGa              <  1:478514/143‑1 (MQ=255)                                                                                                                          gTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAg             >  2:362877/1‑143 (MQ=255)                                                                                                                                agagCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCCCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATcc       >  1:41003/1‑143 (MQ=255)                                                                                                                                  agCGCCAACCTTttggcgctctctttactgcttatcgccgctgctacctttgtcgttacgctgtttttgccgcccaatttttgggtgagcggcgtgaaggcgattgctgaagcggcgatggtcggcgcgctggcggacgggtt     <  2:760606‑M2/143‑132 (MQ=255)                                                                                                                                   gcgcCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCgcgc    >  1:713246/1‑143 (MQ=255)                                                                                                                                     gcCAACCTGTTGGCGCGTCTGAGTTCGATGAGTTTATTCATGCCGTTCCCCAGACACCCTGCCGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCa  <  1:207630/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                       ACCGCAAACCAGTCCGCCAGCGCGCCGACCATCGCCGCTTCAGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCA  >  NC_000913/4567074‑4567348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.