New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1307070 =	0 (0.000)	18 (0.430)	17/278	1.6	100%	coding (81/330 nt)	yciU	DUF440 domain‑containing protein YciU
	?	NC_000913	= 1979270	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

TTCTTCAGTCCGTTGCTGTAAAACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1307205‑1307070 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATC  <  NC_000913/1979270‑1979134                                                                                                                                                                                                                                                                                   TTCTTCAGTCCGTTGCTGTAAAACGTAGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAACCGCTTGAACAGGCCTACGATATTTCTCTCGAACTGGCTGCCGGTGATG                                                                                                                                    >  2:744193/1‑143      CAGTCCGTTGCTGTAAAACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCC                                                                                                                               >  2:321418/1‑143             TTGCTGTAACACGTCGCCAACCGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGGAGTGGCTGCCGGCGAGGCTGCCACCTTgc                                                                                                                        >  2:212159/1‑141                                      gcTAAACAGGTAGTAACGATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACATGCCTACGATATTTTTCTCGAACTGGCTGCCGGTTATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTT                                                                                               <  1:464373/141‑1                                        TAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                                                             <  1:477490/143‑1                                             AGGTAGGAACTATGGAGATGGATCTAAACAATCGCCTCACTGAAGATGAAACGCTTGAACAGGCCTACGATGTTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGC                                                                                        <  1:508125/143‑1                                                              ATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT                                                                       <  1:92723/143‑1                                                                        ACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTG                                                             <  1:543806/143‑1                                                                              GCCTGACTGAAGATGAATCGCTTGAACAGGCCTACGATATTGTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATTGTGGTGTTTTACGTGTGCTGTAGTGTCTTCTGTTTCTATCAGCTGTCCCTC                                                       <  1:149280/143‑1                                                                                  GACTGAAGATGAAACGCTGGAACAGGCCGACGAGATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGT                                                   <  1:308737/143‑1                                                                                             AAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCGGGGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTGCTGTGGCTTCTGCTTCTATCAGCTGTTCCCCCTGTTCACCTACcgc                                        >  2:547638/1‑140                                                                                                    TGAACAGGCCCACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATCGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTG                                 <  1:383858/143‑1                                                                                                       ACAGGCCTACGATATTTTTCTCGAACTGGCGGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTG                              <  1:212159/143‑1                                                                                                              TACGATATTTTTCTCGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTCTCCTCTTTCTCTCTTGTTCAGCTACTGACGGGGTGGTGCGTAACG                       <  1:744193/143‑1                                                                                                                           TCGAACTGGCTGCCGGGCATGCTGCAAACTTACTGATTTAGTGTATGATGGTGGTTGTGAGGTGCTCCAGTGGCGTCTGTTACTACCAGCTCGCCCGCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGC          <  1:319958/143‑1                                                                                                                            CGAACTGGCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCC         <  1:328199/143‑1                                                                                                                                   GCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATC  >  1:579197/1‑143                                                                                                                                   GCTGCCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTCGTGCGTAACGGCAACAGCACCGCCGCACATC  >  2:184840/1‑143                                                                                                                                                                                                                                                                                   TTCTTCAGTCCGTTGCTGTAAAACGTCGCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGACTGAAGATGAAACGCTTGAACAGGCCTACGATATTTTTCTCGAACTGGCTGCCg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1307205‑1307070 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATC  <  NC_000913/1979270‑1979134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.