New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1307070 =	0 (0.000)	18 (0.430)	17/278	1.6	100%	coding (81/330 nt)	yciU	DUF440 domain‑containing protein YciU
	?	NC_000913	= 1979270	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

ACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGTTTTACAGCAACGGACTGAAGAA  >  NC_000913/1306933‑1307205                                                                                                                                          |                                                                                                                                        gatgtgcggcggtgctgttgccgttacgcacgaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGc                                                                                                                                    >  2:184840‑M1/138‑143 (MQ=255) gatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGc                                                                                                                                    >  1:579197‑M1/138‑143 (MQ=255)        ggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCg                                                                                                                             <  1:328199‑M1/13‑1 (MQ=255)         gcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggcgggcgagctggtagtaacagacgccactggagcacctcacaaccaccatcatacactaaatcagtaagtttgcagcatgcccGGCAGCCAGTTCga                                                                                                                            <  1:319958‑M1/14‑1 (MQ=255)                      cgttacgcaccaccccgtcagtagctgaacaagagagaaagaggagagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTa                                                                                                               <  1:744193‑M1/27‑1 (MQ=255)                             caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCCGCCAGTTCGAGAAAAATATCGTAGGCCTGt                                                                                                        <  1:212159‑M1/34‑1 (MQ=255)                                caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacacgatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTGGGCCTGTTCa                                                                                                     <  1:383858‑M1/37‑1 (MQ=255)                                       gcggtaggtgaacagggggaacagctgatagaagcagaagccacagcagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatccccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGttt                                                                                              >  2:547638‑M1/100‑143 (MQ=255)                                                  acaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATCTCGTCGGCCTGTTCCAGCGTTTCATCTtcagtc                                                                                   <  1:308737‑M1/55‑1 (MQ=255)                                                      gagggacagctgatagaaacagaagacactacagcacacgtaaaacaccacaatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAACAATATCGTAGGCCTGTTCAAGCGATTCATCTTCAGTCAGGc                                                                               <  1:149280‑M1/59‑1 (MQ=255)                                                            cagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGt                                                                         <  1:543806‑M1/65‑1 (MQ=255)                                                                      aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGatccat                                                               <  1:92723‑M1/75‑1 (MQ=255)                                                                                       gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAACATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTGAGGCGATTGTTTAGATCCATCTCCATAGTTCCTACCt                                              <  1:508125‑M1/92‑1 (MQ=255)                                                                                            tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTa                                         <  1:477490‑M1/97‑1 (MQ=255)                                                                                              aaaaacaccatcatacactaaatcagtaagttggcagcataaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCATGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATCGTTACTACCTGTttagc                                       <  1:464373‑M1/99‑3 (MQ=255)                                                                                                                       gcaaggtggcagcctcgccGGCAGCCACTCCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCGGTTGGCGACGTGTTACAGCaa              >  2:212159‑M1/20‑143 (MQ=255)                                                                                                                              ggcagcatcaccGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGTTTTACAGCAACGGACTg       >  2:321418‑M1/13‑143 (MQ=255)                                                                                                                                   catcaccGGCAGCCAGTTCGAGAGAAATATCGTAGGCCTGTTCAAGCGGTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCTACGTTTTACAGCAACGGACTgaagaa  >  2:744193‑M1/8‑143 (MQ=255)                                                                                                                                          |                                                                                                                                        ACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGGCAGCCAGTTCGAGAAAAATATCGTAGGCCTGTTCAAGCGTTTCATCTTCAGTCAGGCGATTGTTTAGATCCATATCCATAGTTACTACCTGTTTAACCTCTGTTGGCGACGTTTTACAGCAACGGACTGAAGAA  >  NC_000913/1306933‑1307205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.