New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 566841	12 (0.290)	7 (0.230) +TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA	7/196	NT	29.1%	noncoding (65/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	34 (0.820)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

GCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/566803‑566841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGC  <  NC_000913/572471‑572370                                        ||||||||||||||||||||||||||||||||||                                                                                                       GCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTG                                  >  2:320605/1‑143    GCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGCGTTGCAGGTGCATTTCTGCATCTGTGAAG                               >  2:644450/1‑143      TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGtacgt                             >  2:571679/1‑138           GAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAG                        >  1:360395/1‑143            AGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCCGGCGCATTTCCGCATCTGAGACGAGCGAAGA                       >  2:21539/1‑143                          ggtggtTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCGTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTA         <  2:246672/137‑1                                 GACTCACTTAGCCGCGTGTCCACTATTGCGGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGC  <  1:385074/143‑1                                        ||||||||||||||||||||||||||||||||||                                                                                                       GCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/566803‑566841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGC  <  NC_000913/572471‑572370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.