New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 566841	12 (0.290)	7 (0.230) +TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA	7/196	NT	29.1%	noncoding (65/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	34 (0.820)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

ATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAAC  >  NC_000913/566709‑566977                                                                                                                                     |                                                                                                                                         aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                                                                                                >  2:559519/1‑143 (MQ=255)    aCCTGGGGACGCATAAGCGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg                                                                                                                             <  2:643936/143‑1 (MQ=255)    aCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGCCAGCAACAg                                                                                                                             >  1:41016/1‑143 (MQ=255)              gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTACGTGAGTAAACTCTCCGTCAGAGGTGCCTCACCTGCCAAAAACAGTATCAACCAg                                                                                                                   >  1:230998/1‑143 (MQ=21)                      gCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCGGATCGTACGCAGCAATAGTGGACACGCGGCGAAGTGAGTAAACTCTCAGTAAGAGGCGACTCACCGGACAAAACGAGTAGCAACCCGGaaacacc                                                                                                           >  2:595163/1‑139 (MQ=18)                             tgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCGGAGGTGACTCACATGACAAACACAGGATCAACCAGTAACAAACCCCGCaa                                                                                                    >  1:482332/1‑143 (MQ=18)                                acaataCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGGGACTCACATGACAAAAACAGTATCAACCACTAAAAAACACCGTaaaaa                                                                                                 >  2:333046/6‑141 (MQ=17)                                acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa                                                                                                 <  1:49788/143‑1 (MQ=255)                                   ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCa                                                                                              <  1:604679/143‑1 (MQ=255)                                    gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAACACGGTATCAACCCGTAAAAAACCCCGTAAACAGCAt                                                                                             >  1:768612/1‑143 (MQ=255)                                             gcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGCGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGac                                                                                    >  2:597595/1‑142 (MQ=255)                                                 tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTc                                                                                <  2:627701/143‑1 (MQ=40)                                                                                               gcgGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtg                                  >  2:320605‑M1/1‑39 (MQ=255)                                                                                                  gCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagcgttgcaggtgcatttctgcatctgtgaag                               >  2:644450‑M1/1‑36 (MQ=255)                                                                                                    tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgtacgt                             >  2:571679‑M1/1‑34 (MQ=255)                                                                                                         gAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaag                        >  1:360395‑M1/1‑29 (MQ=255)                                                                                                          aGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgccggcgcatttccgcatctgagacgagcgaaga                       >  2:21539‑M1/1‑28 (MQ=255)                                                                                                                        ggtggttgactcaCttagccgcgtgtccactattgctgggtaagatcagttcacgcgtcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgta         <  2:246672‑M1/137‑130 (MQ=255)                                                                                                                               gACTCACttagccgcgtgtccactattgcggggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgcgc  <  1:385074‑M1/143‑137 (MQ=255)                                                                                                                                     |                                                                                                                                         ATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAAC  >  NC_000913/566709‑566977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.