New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42776250 (1.210)3 (0.080) 3/250 NT 6.1% coding (116/1848 nt) secD Sec translocon accessory complex subunit SecD
?NC_000913 = 427779 45 (1.150)coding (133/1848 nt) secD Sec translocon accessory complex subunit SecD

TTAAAATTTTTCCCTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTT  >  NC_000913/427620‑427900
                                                                                                                                              |                                                                                                                                          
ttAAAATTTTTCCCTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGG                                                                                                                                            <  1:583067‑M1/143‑1 (MQ=255)
       ttttCCCTTAGGGAATTGCCGTGTTCAACCGTGATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCATCCCCACCTGTTGGGTGAGGATCCGGCTGTTCAGATCACTGGTgcgcgc                                                                                                                                     <  2:470004/143‑1 (MQ=255)
            ccTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGCGt                                                                                                                                >  2:136883/1‑143 (MQ=255)
             cTAAGGGAATTGCTGTTTTAAACCTGTATCCTTTGGGGAAGTCCGTCATGCTCATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTc                                                                                                                               <  2:273718/143‑1 (MQ=255)
             cTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGGGGATCCGGCTGTTCAGATCACTGGTGCGCGCGCAGTc                                                                                                                               >  1:745501/1‑143 (MQ=255)
             cTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTc                                                                                                                               <  2:397079/143‑1 (MQ=255)
              tAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAGCCTGTTTGGTGCGGATCCGGCTGTTCAGCTCACTGGTGCGCGCGGAGCcg                                                                                                                              >  2:612960/1‑143 (MQ=255)
              tAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTcg                                                                                                                              >  1:645915/1‑143 (MQ=255)
              tAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTATTCGGTCGGCTGTATGGGCTTCCCACCCTGTTGGGTGAGGATCCGGCTGTTCAGAGCCCTGGTGCGCGCGGAGCcg                                                                                                                              >  2:46360/1‑143 (MQ=255)
                        gCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCACCCTGCTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGCGTCGCCGccagtgc                                                                                                                    <  2:114080‑M2/143‑8 (MQ=255)
                         gcgTGTTAAAGCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCCACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGcggcgactccgcgcgcaccagtgat                                                                                                                   <  2:175608‑M1/142‑26 (MQ=255)
                               tAAACTGTTATGCTTTGTGGAAGTACGTCATGCTGATCGTGGTGGTTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACg                                                                                                             <  2:83097/143‑1 (MQ=255)
                                   ccGTTATCCTGCGAGTAAGTACGTCATGCTGATCGTGGTGAGTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGa                                                                                                         <  1:360852/143‑1 (MQ=255)
                                     gTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTTGTGAGGATCCGGCTGTTCATATCTCTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATc                                                                                                       <  1:200258/143‑1 (MQ=255)
                                      ttATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGcggcgactccgcgcgcaccagtgatctga                                                                                                               <  2:679203‑M1/134‑30 (MQ=255)
                                      ttATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGcggcgactccgcgcgcaccagtgatctga                                                                                                               >  1:679203‑M1/1‑105 (MQ=255)
                                            tttGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTcc                                                                                                >  1:129620/1‑143 (MQ=255)
                                             ttGCGGAAGTACGTCCTGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCa                                                                                               <  1:183195/143‑1 (MQ=255)
                                              tgtgGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCATCCTGTTTGGTGAGGCTCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAg                                                                                              <  2:204424/143‑1 (MQ=255)
                                                  gAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGaaaa                                                                                          <  1:340626/143‑1 (MQ=255)
                                                     gtccGTCATGCGGAGCGTGGTGATTGTCGGCGGTCTGCTGCGTGCGCTTCCCGACCTGTGTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGGCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGt                                                                                       <  2:146625/140‑1 (MQ=255)
                                                      tACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGtt                                                                                      >  2:314033/1‑143 (MQ=255)
                                                             tgcgcttCGTGGTGTTTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACaagaa                                                                               <  2:305375/137‑1 (MQ=255)
                                                             tGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACaagaa                                                                               <  2:209077/143‑1 (MQ=255)
                                                                    cGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGaaaaaa                                                                        <  1:426264/143‑1 (MQ=255)
                                                                       ggtgATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATaa                                                                     <  1:314033/143‑1 (MQ=255)
                                                                          gATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGCTCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAACCGTCACAAGACGAAAAAATAACTg                                                                  >  2:379260/1‑143 (MQ=255)
                                                                              gTCATGGGTCTGCTGTATGCGCTTCCCAACCGGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTaa                                                              <  2:389310/143‑1 (MQ=255)
                                                                               tCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTACTAAg                                                             >  2:223790/1‑143 (MQ=255)
                                                                                 aTCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGCTACACGAAGCCAAAATCACTCCTCAGTc                                                           >  1:475689/1‑143 (MQ=255)
                                                                                   cGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTa                                                               <  2:633482/137‑1 (MQ=255)
                                                                                   cGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTa                                                               >  1:633482/1‑137 (MQ=255)
                                                                                          ctgTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAATAAGAAAAAATAACTGCTAAGTCTGTGGCACt                                                  <  1:346278/143‑1 (MQ=255)
                                                                                          ctgTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACt                                                  >  1:198541/1‑143 (MQ=255)
                                                                                          ctgTATGCGATTCCCAACGTGTTTGATGAGGATGCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGCATGAAGTTTGTTTCAAGTGCAGATAACGTTACAAGAAAAAAAAAGAAGTAGTAAGTCTAAGGCagt                                                  >  2:360907/1‑141 (MQ=255)
                                                                                               tGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGCAAACGTCACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAag                                             >  2:530507/1‑143 (MQ=255)
                                                                                                  gcTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGCgg                                          >  1:353712/1‑143 (MQ=255)
                                                                                                        cAACCTGTTTGGTGAGGATCCGGCTGTCCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTa                                    <  1:137280/143‑1 (MQ=255)
                                                                                                         aaCCTGTTGGGTGAGGAACCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTAt                                   <  1:564486/143‑1 (MQ=255)
                                                                                                               tttGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGCCACTGGAAGAGGGCGCTATTCTTgc                             >  1:754033/1‑143 (MQ=255)
                                                                                                               tttGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACAGCTAAGTCGGTGGCACTGGAAGAGGGGGCCATTCGTgc                             >  2:368192/1‑143 (MQ=255)
                                                                                                                    tGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGACAACGTTGGGAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCt                        >  1:810567/1‑143 (MQ=255)
                                                                                                                     gAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGCGGCACAGGAATATGTCGCTATTCTGGAGCGCtc                       >  2:319770/1‑142 (MQ=255)
                                                                                                                      aGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCGAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTGTGTGGCACTGGAAGCGGGAGGTACTCTTGCGCGCTTc                      >  2:427380/1‑143 (MQ=255)
                                                                                                                        gATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGGTAAGTCTGAGGCCCTGGAAGCGGGCGCTATTCTTGCGCGCTTCGa                    >  2:604747/1‑143 (MQ=255)
                                                                                                                         aTCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGAc                   <  1:657365/143‑1 (MQ=255)
                                                                                                                            cGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTcc                >  2:410582/1‑143 (MQ=255)
                                                                                                                                 gTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGa           <  1:84691/143‑1 (MQ=255)
                                                                                                                                 gTTCAGATCACTGGGGCGCCCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGTGCGCTATTCTTGCGCGCTTCGACTCCACTGa           <  1:288532/143‑1 (MQ=255)
                                                                                                                                 gTTCACATCACTGGGGCGCGCGGCCTCGCCGCCAGTGAGCAAACGCTGAGCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGa           <  2:686319/143‑1 (MQ=255)
                                                                                                                                   tCAGATCACTGGTGCGCGCGGAGTCGCCGccagtgatctgaacagccggatcctcaccaaacaggttgggaagcgcatacagcagaccgatgacaatcaccacgatcagcatgacgtacttccacaaaggataa                  <  2:679203‑M2/134‑106 (MQ=255)
                                                                                                                                   tCAGATCACTGGTGCGCGCGGAGTCGCCGccagtgatctgaacagccggatcctcaccaaacaggttgggaagcgcatacagcagaccgatgacaatcaccacgatcagcatgacgtacttccacaaaggataa                  >  1:679203‑M2/1‑29 (MQ=255)
                                                                                                                                    cAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGacac        >  1:798135/1‑143 (MQ=255)
                                                                                                                                     aGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACAcc       >  1:630111/1‑143 (MQ=255)
                                                                                                                                     aGATCACTGGTGCGCGCGGAGGCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACCAGAAGAAACAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCGCTTCTTGCGCGCTTCGGCTCGAcgtgcacc       >  2:586531/1‑136 (MQ=255)
                                                                                                                                       aTCACTGGTGCGCGCGGAGTCGCCGccagtgatctgaacagccggatcctcaccaaacaggtggggaagcgcatacagcagaccgatgacaatcaccacgatcagcatgacgtacttccacaaaggataacgctttaacacgc     <  2:175608‑M2/143‑119 (MQ=255)
                                                                                                                                       aTCACTGGTGCGCGCGGAGTCGCCGCCAGTAAGCAAACGCTGATCCAGGTTCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGAAAGAGGGCGCTGTTCTTGCGACCTTCGGCTCCACTGACACCCa     >  1:808112/1‑143 (MQ=255)
                                                                                                                                        gcaCTGGcggcgacgccgcgcgcaccagtgatctgaacagccggatcctcaccaagcagggtgggaagcgcatacagcagaccgatgacaatcaccacgatcagcatgacgtacttccacaaaggataacggtttaacacggc    <  2:114080‑M1/142‑137 (MQ=255)
                                                                                                                                         cACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAACAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGt   >  1:194366/1‑143 (MQ=255)
                                                                                                                                          aCTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGtt  <  2:324415/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                          
TTAAAATTTTTCCCTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTT  >  NC_000913/427620‑427900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.