New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	474269 =	NA (NA)	3 (0.080)	3/252	NT	NA	intergenic (+17/+32)	amtB/tesB	ammonia/ammonium transporter/acyl‑CoA thioesterase II
	?	NC_000913	474296 =	NA (NA)					intergenic (+44/+5)	amtB/tesB	ammonia/ammonium transporter/acyl‑CoA thioesterase II

TCCGGTGTTGTGGCATTTATCGGCTACAAATTGGCGGATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGCTGGACGCCGA  >  NC_000913/474127‑474405                                                                                                                                               |                                                                                                                                         tCCGGTGTTGTTGCATTTCTCGTCTACAAATTGGCGGATCTCACGGTTCGTCTGCGTGTACCGGAAGACCAGGAGCTAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAAc                                                                                                                                          <  1:436704/143‑1 (MQ=255) tCCGGTGTTGTGGCATTTATCGGCTACAAATTGGCGGATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAAc                                                                                                                                          >  2:811033/1‑143 (MQ=255)   cGGTGTTGTGGCATTTATCGGCTACAAATTGGCGGAGCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAg                                                                                                                                        <  1:445447/143‑1 (MQ=255)                     cGGCTACAAATTGGCGGATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCACAACACGCCAAGTGGATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTc                                                                                                                      >  1:376001/1‑143 (MQ=255)                      ggCTACAAATTGGCGGAGCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTcc                                                                                                                     <  2:465615/143‑1 (MQ=255)                          aCAAATTGGCGGATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTGTTCACCTCCGGcc                                                                                                                 >  2:367601/1‑142 (MQ=255)                            aaaTTGGCGGATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAt                                                                                                               >  1:41047/1‑143 (MQ=255)                              acatcggcgtccggcgcacgtggctttgtgcgcggtgagttttatacaaaagacggcgtactggttgcctccaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGATGGTTTTCACCTCCGGCTAttt                                                                                                             >  2:526279‑M1/114‑143 (MQ=255)                                tGGCGGATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAttttt                                                                                                           >  1:688959/1‑143 (MQ=255)                                     gATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCCGACGGTTTTCACCTCCGGCTCTTCTTTTCAt                                                                                                      >  2:522889/1‑143 (MQ=255)                                      gtccagcgcacgtggcgttgtgcgcggtgagttttatacccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAAtt                                                                                                     >  2:511442‑M1/106‑143 (MQ=255)                                      aTCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGACACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACGGCCGGACGGTTTTCACCTCCGGCTAGTTTTTAAAtt                                                                                                     >  1:553575/1‑143 (MQ=255)                                        cggACTGTTGGTCTGCGTGGACCGTAACAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACATGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATtgt                                                                                                   <  1:709835/141‑1 (MQ=255)                                        ccagcgcacgtggctttgtgcgcggtgagttttatacccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATtgt                                                                                                   >  2:534448‑M1/104‑143 (MQ=255)                                         ggACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATtgtg                                                                                                  <  2:339722/142‑1 (MQ=255)                                          gACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGa                                                                                                 >  1:703594/1‑143 (MQ=255)                                          gACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGa                                                                                                 <  1:46079/143‑1 (MQ=255)                                              cttGGTCTGCGTGTACCGGACGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTAc                                                                                             <  2:575870/142‑1 (MQ=255)                                                tGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGAAACGGCTGGAATGCCGATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGc                                                                                           <  1:811033/143‑1 (MQ=255)                                                 ggTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTACTTTTTTAATTGTGATTCCGCa                                                                                          >  2:216121/1‑143 (MQ=255)                                                      gCGTGTACCGGAAGAGCAGCAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCAcc                                                                                     <  2:327248/143‑1 (MQ=255)                                                           tACAGGAGGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTc                                                                                <  1:94475/143‑1 (MQ=255)                                                               ggAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGCCGAGAATGACTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGATAATCACCTCTGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGa                                                                            >  1:728345/1‑143 (MQ=255)                                                                gAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGaa                                                                           <  2:489068/143‑1 (MQ=255)                                                                 aaGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAAc                                                                          <  1:42472/143‑1 (MQ=255)                                                                 aaGAGCAGGAGCGAGAAGGGCTGGATGGCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAAc                                                                          <  1:212629/143‑1 (MQ=255)                                                                     gCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTCTTTTTGTAATTGTGATTACGCATCACCGCTTCCTGAACGGTc                                                                      >  1:337323/1‑143 (MQ=255)                                                                     gCAGGAGCGAGAAGGGCTGGATGTCAACAACCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTc                                                                      <  1:242861/143‑1 (MQ=255)                                                                        ggAGCGAGAAGGTCTGGATCTCCACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAg                                                                   <  1:430405/143‑1 (MQ=255)                                                                        ggAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAg                                                                   <  1:431471/143‑1 (MQ=255)                                                                            cGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAACCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCCCCCCTTCCTGGACGGTctgggcga                                                               >  1:458323/1‑136 (MQ=255)                                                                            cGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCaa                                                               <  1:168326/143‑1 (MQ=255)                                                                                  gggCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTa                                                         >  1:285887/1‑143 (MQ=255)                                                                                     cTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTCCGc                                                      >  2:542640/1‑143 (MQ=255)                                                                                      tGGACGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGcc                                                     <  1:520383/143‑1 (MQ=255)                                                                                       ggATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTACTTGTGATTACGCACCACCCCTTCCTGTACGCCCCCCGCAACCAGTACgtag                                                    >  1:677345/1‑140 (MQ=255)                                                                                            tCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGATTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGTGCGCGTCAACCAGTccgccggtctg                                               >  2:105820/1‑138 (MQ=255)                                                                                             cAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTgg                                              <  1:479085/143‑1 (MQ=255)                                                                                              aaCAGCCACGGCGAGAATGCCTATGACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCGCCTCCGGCTATTGTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGACGTCTAggg                                             <  2:332289/143‑1 (MQ=255)                                                                                              aaCAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAACCAGCCGGACGGGTGTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTggg                                             <  1:86897/143‑1 (MQ=255)                                                                                              aaCAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCCCCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTggg                                             >  1:362614/1‑143 (MQ=255)                                                                                              aaCAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAGCCAGTACGCCGGCTTggg                                             >  1:230419/1‑143 (MQ=255)                                                                                              aaCAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTggg                                             <  1:488876/143‑1 (MQ=255)                                                                                                    cACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAGCGGTCGAGGCAACCAGTACGCCGTCTTGGGTATaaa                                       >  1:2438/1‑143 (MQ=255)                                                                                                     aCGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAGCCGCCGGACGGTTTTCACCTCCGGCTATGTATTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATaaaa                                      <  1:222122/143‑1 (MQ=255)                                                                                                     aCGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGACGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATaaaa                                      <  1:163716/143‑1 (MQ=255)                                                                                                                   tataACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACg                                                                         >  2:190648/1‑94 (MQ=255)                                                                                                                   tataACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACg                                                                         <  1:190648/94‑1 (MQ=255)                                                                                                                    gtgaCGCGTATCAAGCACTGCTAAAAACAGCCGGACGGTTTTCTCCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACaaa                       <  2:554974/140‑1 (MQ=255)                                                                                                                      aaCGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCGGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGc                     >  1:121265/1‑143 (MQ=255)                                                                                                                         gcgTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCAc                  >  1:73062/1‑143 (MQ=255)                                                                                                                             agcaggCACTGCAAAGAGCAGCCGGACGGTTTTCACCTCCTGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTgc              <  2:93047/138‑1 (MQ=255)                                                                                                                              aCAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCCGTACGCCGTCTTGGGTATAAAACTCACCGCCCACAAAGCCACCTgcg             >  2:424308/1‑143 (MQ=255)                                                                                                                                   cACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGCTGGa        >  1:288622/1‑143 (MQ=255)                                                                                                                                      tGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAAGGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGCTGGACGc     >  1:244293/1‑143 (MQ=255)                                                                                                                                         aaacaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAGAGCCACGTGCGCTGGACGCCGa  >  1:537249‑M1/7‑143 (MQ=255)                                                                                                                                         aaaaacCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGCTGGACGCCGa  >  1:127698‑M1/7‑143 (MQ=255)                                                                                                                                               |                                                                                                                                         TCCGGTGTTGTGGCATTTATCGGCTACAAATTGGCGGATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGCTGGACGCCGA  >  NC_000913/474127‑474405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.