New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 909154	34 (0.820)	3 (0.080)	3/254	NT	7.6%	coding (141/1002 nt)	ltaE	low‑specificity L‑threonine aldolase
	?	NC_000913	= 909188	40 (1.000)					coding (107/1002 nt)	ltaE	low‑specificity L‑threonine aldolase

GCACCGCCGCGCCACCGGCTTCAAACAGATAGTTATGCGCGGCCTGACCGACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAAATCAATCATG  >  NC_000913/909012‑909295                                                                                                                                               |                                                                                                                                              gCACCGCCGCGCCACCGGCTTCAAACAGATAGTGATGCGCGGCCTGACCGACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCG                                                                                                                                               <  2:99556‑M1/143‑1 (MQ=255)             cACCGGCTTCAAACAGATAGTTATGCGCGGCCTGACCGACAATATACTCCTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGGCTGAGTGCCGGTAGGAAGAAACATCAAGATGACGCTACCGGAAAGCTctgct                                                                                                                                   >  1:727484/1‑143 (MQ=255)                cGGCTTCAAACAGATAGTTATGCGCGGCCTGACCGACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCg                                                                                                                                >  1:4120/1‑143 (MQ=255)                cGGCTTCAAACAGATAGTTATGCGCGGCCTGACCGACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCCCTGCTGCg                                                                                                                                >  2:32397/1‑143 (MQ=255)                 ggCTTCAAACAGATAGTTATGCGCGGCCTGACCGACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAACTGGAGGCTGCTTTACCGGAAAGCTctgctcagt                                                                                                                               >  2:550990/1‑139 (MQ=255)                     tCAACCAGATAGTGAGGCGCGGCCTGACCGCCAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTc                                                                                                                           <  2:181583/143‑1 (MQ=255)                          ctgATAGTTATGCGCGGCCTGACCGACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCa                                                                                                                      <  2:496999/141‑1 (MQ=255)                              tAGCTAGGCGCGGCCCGACCGACAACATACTCTTCGCCGCGTGCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGgaaagctctgcaggactacgcagcagagc                                                                                                                  <  1:55279‑M1/143‑30 (MQ=255)                               aGTTATGCGCGGCCTGACCGACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTCAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCa                                                                                                                 <  1:513062/143‑1 (MQ=255)                                          gCCTGACCGACAAGATCCTCTTCGCCGCGTTCGCGGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGttaatgctctgcaggactacgcagcagagctttccggtaaa                                                                                                      <  2:230957‑M1/143‑42 (MQ=255)                                             tGACCGACCATAGCCTCTGCGCCGCGTTCGCAGTGCCTGAGCAGAGCTACCAGGTTGGCCTTAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGttaatgctctgcaggactacgcagcagagctttccggtaaagaa                                                                                                   <  1:592372‑M1/143‑45 (MQ=255)                                                  gACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTCGTCCTGCAGAGCATTATCGGTAGGGTCGtctc                                                                                              >  1:194739/1‑143 (MQ=255)                                                    cAATATCCCCTTCGCCGCGTTCGCAGTGACTGCGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCg                                                                                            <  1:520337/143‑1 (MQ=255)                                                         taCTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAAc                                                                                       >  1:37119/1‑143 (MQ=255)                                                              ttCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTATTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTCACGGTCGGGTCGTCTCCGTAACcgtcgc                                                                                  >  1:585127/1‑142 (MQ=255)                                                                  ccgcGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTcccc                                                                              >  1:646668/1‑143 (MQ=255)                                                                  ccgcGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAAGGGCGGCTTCGTTACGGGAAAGCTCTGCGGCGTAGCACTGCAGAGCATTAACGGAAGCGTCGCCTGCGTAAACGTCGTcccc                                                                              >  2:326957/1‑143 (MQ=255)                                                                      gTTCGCAGTGACTGAGCAGAGCGGCCTGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGCAAGCTTTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAAcc                                                                          <  2:519225/143‑1 (MQ=255)                                                                            aGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGggcg                                                                    >  1:165490/1‑143 (MQ=255)                                                                            aGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGggcg                                                                    <  1:535091/143‑1 (MQ=255)                                                                             gTGACGGGGCAGACCGACGCGGTTGGCCTGAGGGCGCGTAGGCAGAAAAATGGCGGCGTCTGTACCGGAAAGCTCTGCTGCGTCGGCCTGCAGCGCAGTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGggcgg                                                                   <  2:506041/143‑1 (MQ=255)                                                                                  tGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCCACCGGGGCGGCcatc                                                              >  1:93184/1‑143 (MQ=255)                                                                                    aGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAGAGCTCTGCTGCGTAGCCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCcatcat                                                            <  1:637258/143‑1 (MQ=255)                                                                                    aGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGCGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCACAACCGGGGCGGCcatcat                                                            >  2:144514/1‑143 (MQ=255)                                                                                      cAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAAGGGCGGCTTCTTTACCGGAACGCTCGGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTCAACGTCGTCCCCAACCGGGGCGGCCATCATCg                                                          >  2:486604/1‑143 (MQ=255)                                                                                         agCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCGTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTCGGGTCGTCTCCGTAAGCGTGGTCCCCAACCGGGGCGGCCCTCCTGGCtt                                                       >  1:679576/1‑143 (MQ=255)                                                                                              ccAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGc                                                  >  2:720459/1‑143 (MQ=255)                                                                                                 ggTGGGCCTGACGGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATg                                               <  2:266168/143‑1 (MQ=255)                                                                                                        cTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGGCGGCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGc                                        >  1:636152/1‑143 (MQ=255)                                                                                                         tGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTGGTCCTGCAGAGCATTAACGGTAGGGGCGTCTCCGTAAACGTCGTCCCCACCCGGGGCAGCCATCATCGCCTCGAGCCCGTCGCGGcc                                       >  2:231967/1‑142 (MQ=255)                                                                                                             tGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGAGTAGTCCTGTAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCCACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGt                                   >  1:202775/1‑143 (MQ=255)                                                                                                                        aGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGt                        >  1:651284/1‑143 (MQ=255)                                                                                                                         gAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACgggt                       >  1:676836/1‑141 (MQ=255)                                                                                                                            aaaTGGCGGCTTCTTTACCGGAAGGCTCTGCTGCGTCGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCACCCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCa                    <  2:725457/143‑1 (MQ=255)                                                                                                                              gtGGCGGCTTCTTTACCGGCAAGCGCTGCTGCGTAGTCCTGCAGGGCATGAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACt                  <  2:256073/142‑1 (MQ=255)                                                                                                                                ggcggcTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGc                <  1:277041/143‑1 (MQ=255)                                                                                                                                 gcggcTTCGTTACCGGAAAGCGCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCg               <  1:336334/143‑1 (MQ=255)                                                                                                                                      ttcttTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAAcggtaaagaagccgccatttttctgcctaccggcactaaggccaacctggtagctctgctcaggcactgcgaacgcggcgcagaggctatggtcggtca          <  1:592372‑M2/143‑100 (MQ=255)                                                                                                                                      ttcttTACCGCAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAaat          <  1:326946/143‑1 (MQ=255)                                                                                                                                         tttACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAAcggtaaagaagccgccatttttctgcctaccggcactcaggccaacctggtcgctctgctcagtcaccgcgaacgcggcgaagaggatcttgtcggtcaggc       <  2:230957‑M2/143‑103 (MQ=255)                                                                                                                                            aCCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAAatcaatca    <  1:165049/143‑1 (MQ=255)                                                                                                                                              cGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGCACGCTAACGAGATGCCTGGGTAAAGGAATCAta  >  2:164843/1‑142 (MQ=255)                                                                                                                                              cGGAAAGCCCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGCCTCCGTAAACGTCGGCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGGCGGGTAACGGTATCACTGCGTAAATCAATCATg  <  1:728856/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                              GCACCGCCGCGCCACCGGCTTCAAACAGATAGTTATGCGCGGCCTGACCGACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAAATCAATCATG  >  NC_000913/909012‑909295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.