New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 90915434 (0.820)3 (0.080) 3/254 NT 7.6% coding (141/1002 nt) ltaE low‑specificity L‑threonine aldolase
?NC_000913 = 909188 40 (1.000)coding (107/1002 nt) ltaE low‑specificity L‑threonine aldolase

GACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAAATCAATCATGGCATGTCCTTATTATGACGGGAAATGC  >  NC_000913/909061‑909322
                                                                                                                               |                                                                                                                                      
gACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTCGTCCTGCAGAGCATTATCGGTAGGGTCGtctc                                                                                                                         >  1:194739/1‑143 (MQ=255)
  cAATATCCCCTTCGCCGCGTTCGCAGTGACTGCGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCg                                                                                                                       <  1:520337/143‑1 (MQ=255)
       taCTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAAc                                                                                                                  >  1:37119/1‑143 (MQ=255)
            ttCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTATTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTCACGGTCGGGTCGTCTCCGTAACcgtcgc                                                                                                             >  1:585127/1‑142 (MQ=255)
                ccgcGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTcccc                                                                                                         >  1:646668/1‑143 (MQ=255)
                ccgcGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAAGGGCGGCTTCGTTACGGGAAAGCTCTGCGGCGTAGCACTGCAGAGCATTAACGGAAGCGTCGCCTGCGTAAACGTCGTcccc                                                                                                         >  2:326957/1‑143 (MQ=255)
                    gTTCGCAGTGACTGAGCAGAGCGGCCTGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGCAAGCTTTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAAcc                                                                                                     <  2:519225/143‑1 (MQ=255)
                          aGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGggcg                                                                                               >  1:165490/1‑143 (MQ=255)
                          aGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGggcg                                                                                               <  1:535091/143‑1 (MQ=255)
                           gTGACGGGGCAGACCGACGCGGTTGGCCTGAGGGCGCGTAGGCAGAAAAATGGCGGCGTCTGTACCGGAAAGCTCTGCTGCGTCGGCCTGCAGCGCAGTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGggcgg                                                                                              <  2:506041/143‑1 (MQ=255)
                                tGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCCACCGGGGCGGCcatc                                                                                         >  1:93184/1‑143 (MQ=255)
                                  aGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAGAGCTCTGCTGCGTAGCCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCcatcat                                                                                       <  1:637258/143‑1 (MQ=255)
                                  aGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGCGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCACAACCGGGGCGGCcatcat                                                                                       >  2:144514/1‑143 (MQ=255)
                                    cAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAAGGGCGGCTTCTTTACCGGAACGCTCGGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTCAACGTCGTCCCCAACCGGGGCGGCCATCATCg                                                                                     >  2:486604/1‑143 (MQ=255)
                                       agCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCGTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTCGGGTCGTCTCCGTAAGCGTGGTCCCCAACCGGGGCGGCCCTCCTGGCtt                                                                                  >  1:679576/1‑143 (MQ=255)
                                            ccAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGc                                                                             >  2:720459/1‑143 (MQ=255)
                                               ggTGGGCCTGACGGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATg                                                                          <  2:266168/143‑1 (MQ=255)
                                                      cTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGGCGGCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGc                                                                   >  1:636152/1‑143 (MQ=255)
                                                       tGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTGGTCCTGCAGAGCATTAACGGTAGGGGCGTCTCCGTAAACGTCGTCCCCACCCGGGGCAGCCATCATCGCCTCGAGCCCGTCGCGGcc                                                                  >  2:231967/1‑142 (MQ=255)
                                                           tGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGAGTAGTCCTGTAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCCACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGt                                                              >  1:202775/1‑143 (MQ=255)
                                                                      aGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGt                                                   >  1:651284/1‑143 (MQ=255)
                                                                       gAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACgggt                                                  >  1:676836/1‑141 (MQ=255)
                                                                          aaaTGGCGGCTTCTTTACCGGAAGGCTCTGCTGCGTCGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCACCCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCa                                               <  2:725457/143‑1 (MQ=255)
                                                                            gtGGCGGCTTCTTTACCGGCAAGCGCTGCTGCGTAGTCCTGCAGGGCATGAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACt                                             <  2:256073/142‑1 (MQ=255)
                                                                              ggcggcTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGc                                           <  1:277041/143‑1 (MQ=255)
                                                                               gcggcTTCGTTACCGGAAAGCGCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCg                                          <  1:336334/143‑1 (MQ=255)
                                                                                    ttcttTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAAcggtaaagaagccgccatttttctgcctaccggcactaaggccaacctggtagctctgctcaggcactgcgaacgcggcgcagaggctatggtcggtca                                     <  1:592372‑M2/143‑100 (MQ=255)
                                                                                    ttcttTACCGCAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAaat                                     <  1:326946/143‑1 (MQ=255)
                                                                                       tttACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAAcggtaaagaagccgccatttttctgcctaccggcactcaggccaacctggtcgctctgctcagtcaccgcgaacgcggcgaagaggatcttgtcggtcaggc                                  <  2:230957‑M2/143‑103 (MQ=255)
                                                                                          aCCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAAatcaatca                               <  1:165049/143‑1 (MQ=255)
                                                                                            cGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGCACGCTAACGAGATGCCTGGGTAAAGGAATCAta                             >  2:164843/1‑142 (MQ=255)
                                                                                            cGGAAAGCCCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGCCTCCGTAAACGTCGGCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGGCGGGTAACGGTATCACTGCGTAAATCAATCATg                             <  1:728856/143‑1 (MQ=255)
                                                                                              gAAAGCCCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCGCTCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAAATCAATCATGGc                           <  1:732067/143‑1 (MQ=255)
                                                                                               aaaGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTCGGTCGGGTAACGGTATCACTGCGTAAACCAATCATGGCa                          >  2:179730/1‑143 (MQ=255)
                                                                                                  gCTCTGCTGCGTAGTCCTGCAGAGCTTTCggtaaagaagccgccatttttctgcctaccggcactcaggccaacctggtcgctctgctcagtcactgcgcacgcggcgaagagtatgttgtcggtcgggccgcgcctagcta                        <  1:55279‑M2/143‑114 (MQ=255)
                                                                                                   ctctGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGC‑TGGTCGGGTAACGGTATCACTGCGTAAATCAATCATGGCATGTcc                     >  2:599779/1‑143 (MQ=255)
                                                                                                      tgctgcGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCGAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTGTCACTGCGTAAATCAATCATGGCaggccatt                   >  2:6655/1‑136 (MQ=255)
                                                                                                        ctgcGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTAGTCCCCAACAGGGGCGGCCATCATAGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAAATAAATCGTGGGATGGACttat                 >  2:190602/1‑143 (MQ=255)
                                                                                                         tgcGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAAATCAATCATGGCCTGtgcgtacg                >  2:76333/1‑136 (MQ=255)
                                                                                                               gTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAGCCGGGGCGGCCATCATCGCTGCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAAATCAATCATGGCATGTCCTTATTATGACg          <  1:327524/143‑1 (MQ=255)
                                                                                                                tCCTGCAGAGCATTAACGGTAGGGTCGTGTCCGTAAACGTGATCCCCAGCCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCCTGGTCGGGTCACGGGATCAGAGCGTAAATGAATCAGGGCATGTCCTTATTATggagg         >  2:34349/1‑139 (MQ=255)
                                                                                                                tCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAAATCAATCATGGCATGTCCTTATTATGACgg         <  2:165490/143‑1 (MQ=255)
                                                                                                                       gtgCAGTAACGGTAGGGCCGTCTCCGTAAACGTCTTCCCCCACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCTCGGCGTAAATCAATCATGGCATGTCCTTATTATGACGGGAAATGc  <  2:57196/141‑1 (MQ=255)
                                                                                                                               |                                                                                                                                      
GACAATATACTCTTCGCCGCGTTCGCAGTGACTGAGCAGAGCGACCAGGTTGGCCTGAGTGCCGGTAGGCAGAAAAATGGCGGCTTCTTTACCGGAAAGCTCTGCTGCGTAGTCCTGCAGAGCATTAACGGTAGGGTCGTCTCCGTAAACGTCGTCCCCAACCGGGGCGGCCATCATCGCTTCGAGCATGGCGCGGCTTGGTCGGGTAACGGTATCACTGCGTAAATCAATCATGGCATGTCCTTATTATGACGGGAAATGC  >  NC_000913/909061‑909322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.