| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1561749 | 30 (0.720) | 3 (0.080) | 3/252 | NT | 9.9% | coding (733/1551 nt) | ddpA | putative D,D‑dipeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 1561763 | 26 (0.660) | coding (719/1551 nt) | ddpA | putative D,D‑dipeptide ABC transporter periplasmic binding protein | |||||
GATTAAGAGGCGCTTTGCTGTTATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTAATTGCTGACCTTTTTGCCAGCTTTTCA > NC_000913/1561611‑1561883 | gATTGAGAGGCGCTGTGCTGTTATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGCTCAACCGGCGTCGCATCGGCAATGTCAATGTCGCCACgg < 2:800151/143‑1 (MQ=255) agGCGCTTTGCTGTTATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCt > 1:725231/1‑143 (MQ=255) agGCGCTTTGCTGTTATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGAATTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAACGTCGCAACGGGAGGGCt > 1:426724/1‑143 (MQ=255) tGTTATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACgg > 1:417536/1‑143 (MQ=255) gTTATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCtgcagctctcccgtggcgacatt < 1:775791‑M1/143‑24 (MQ=255) ttATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAGTGTCGCCACGGGAGAGCTGCAGGCGACGGGa > 2:505116/1‑143 (MQ=255) agatacagataGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCACTGTCAATGTCGCCACGGGAGAGCTGCAGGCGGCGGGAGGCAcc > 2:586287/1‑142 (MQ=255) cagataGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCAc < 1:41524/143‑1 (MQ=255) tAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAAtt > 1:517829/1‑143 (MQ=255) tAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAAtt < 1:662236/143‑1 (MQ=255) cgcAGTGACGGATACTCTGCCACATTGACTTTATTGTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTAc < 1:753421/143‑1 (MQ=255) aCGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGACCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCTCTAcc > 1:587651/1‑143 (MQ=255) ggATACTCTGCCCCATTGACTTTACTTGCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCg < 1:563537/143‑1 (MQ=255) ccACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTc < 1:233896/143‑1 (MQ=255) cacaTTGACTTTAGTTTCCGGCTTAAGGGCGTTGAGTTGATCCGCTGGCAGCGCAGAGGCAATGTCAATGTCGCCACGGGAGAGATGCAGGCGACGGGAGGCACTTTCACCCATAATTTTTACCGATTCCGGTTTGAAGTTCg < 2:207673/143‑1 (MQ=255) aCTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTCtt > 1:322054/1‑143 (MQ=255) aCTTTATTTTCCGGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTGTACCGATACCCGTTTGAAGTTCGGTTTAtt < 1:650801/143‑1 (MQ=255) tttATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCtgcagctctcccgtggcgacat < 1:295602‑M1/88‑23 (MQ=255) tttATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCtgcagctctcccgtggcgacat > 2:295602‑M1/1‑66 (MQ=255) tCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTa > 2:217247/1‑143 (MQ=255) cTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCg > 1:603431/1‑143 (MQ=255) cTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACACGCTTGAAGTTCGGTATATTGCGTGGGTCATGCg > 2:692519/1‑143 (MQ=255) gtCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCgg < 1:708878/142‑1 (MQ=255) gcAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGa < 2:417536/142‑1 (MQ=255) aGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGGTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGAtt > 2:693952/1‑143 (MQ=255) gggCGTTGGGTTGATCGACCGGCAGCGCCTCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGTAGTTTCACCAATAATTTTTGCCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGAttt < 1:780194/143‑1 (MQ=255) cGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTCACGCAACAAATGTATAGTTCGGTTTATTGCCTGGGTAATGCGGGTTTGGc > 2:574908/1‑143 (MQ=255) gttgagttgaTCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCa < 2:725231/143‑1 (MQ=255) cgaTCCACCGGCAGCGCATCGGCAATGTCATTGTCGCCACGGTAGAGCTGCAGGTGACGGGAGGCACTTCCACCAATAATTTTTACCGATACCCGTTTGACGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCTCCAGAAc < 2:235157/142‑1 (MQ=255) tCCACCGGCAGCGCATGGGCAATTTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGAGACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTaa < 2:782754/143‑1 (MQ=255) cgcATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGGCGGGAGGCACTTTCACCACTAAATGTTACCGATACCCGATTGAAGTACGGTCTATTGCCCGGGTAGTGCGGATTGGGCACCAGAACGAGTTGCTGCCCtt > 2:38785/1‑143 (MQ=255) aTCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATACTTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTAATTGCTGACGttttt < 2:678505/143‑1 (MQ=255) aTCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGCTTGAAGTTCGGCTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTAATTGCTGACCttttt > 2:50177/1‑143 (MQ=255) cGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTAATTGCTGACCTTTTTGc > 1:271510/1‑143 (MQ=255) aatgtcGCCACGGGAGAGCTGCAggcgacattgacattgccgatgcgctgccggtggatcaactcaacgccctgaagcaggaaaataaagtcaatgtggcagagtatccgtcactgcgcgttacctatctgtatctgaataac < 1:775791‑M2/143‑121 (MQ=255) atgtcGCCACGGGAGAGCTGCAggcgacattgacattgccgatgcgctgccggtggatcaactcaacgccctgaagcaggaaaataaa > 2:295602‑M2/1‑22 (MQ=255) atgtcGCCACGGGAGAGCTGCAggcgacattgacattgccgatgcgctgccggtggatcaactcaacgccctgaagcaggaaaataaa < 1:295602‑M2/88‑67 (MQ=255) | GATTAAGAGGCGCTTTGCTGTTATTCAGATACAGATAGGTAACGCGCAGTGACGGATACTCTGCCACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAATGTCAATGTCGCCACGGGAGAGCTGCAGGCGACGGGAGGCACTTTCACCAATAATTTTTACCGATACCCGTTTGAAGTTCGGTTTATTGCCTGGGTAATGCGGATTTGGCACCAGAACTAATTGCTGACCTTTTTGCCAGCTTTTCA > NC_000913/1561611‑1561883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |